PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold12023-abinit-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24313.8 Da    PI: 8.6208
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold12023-abinit-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.31e-231864349
                                                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                                            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                                                      i +ks r+vtfskRr g++KKA+EL++LC+ae+a+++fs+ gk++ +
  snap_masked-scaffold12023-abinit-gene-0.5-mRNA-1 18 ILSKSHRHVTFSKRRSGLFKKASELCTLCGAEIAIVVFSPAGKVFSF 64
                                                      779*****************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-30867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.829868IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-26878IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-171030IPR002100Transcription factor, MADS-box
PfamPF003193.0E-251764IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-173045IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-174566IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.10.1090.105.1E-485125IPR003197Cytochrome b-c1 complex subunit 7
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006122Biological Processmitochondrial electron transport, ubiquinol to cytochrome c
GO:0005750Cellular Componentmitochondrial respiratory chain complex III
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAKQNLSMGR KKTGCTKILS KSHRHVTFSK RRSGLFKKAS ELCTLCGAEI AIVVFSPAGK  60
VFSFGHPNVE PILDRFLTGN PKLGSKKHQL IEAHQNANVR ELNNYLTQII NQVEAEKKYG  120
EALDHLRGAN QRQCWWEAPI NELGLHELEQ LRVSIEELKK NVAIQANEIL FQSTPNSSLH  180
LEMNGIEYVD FLESKHKVDA ASTIPNAYDF AYGDLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-15893187MEF2C
5f28_B1e-15893187MEF2C
5f28_C1e-15893187MEF2C
5f28_D1e-15893187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023928799.11e-148agamous-like MADS-box protein AGL61
SwissprotQ9FKK21e-51AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2N9J6U11e-111A0A2N9J6U1_FAGSY; Uncharacterized protein
STRINGXP_004511261.14e-82(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-54AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]