PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold11418-abinit-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24196.6 Da    PI: 9.2636
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold11418-abinit-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.43.7e-181561147
                                                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                                            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                                                      k ie +s r vtfskRr gi KKA+EL +LC+ae+ +++fs+ gk +
  snap_masked-scaffold11418-abinit-gene-0.5-mRNA-1 15 KIIEKESDRMVTFSKRRSGINKKASELVTLCGAEIGMVVFSPAGKPF 61
                                                      5699***************************************9855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-28766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.207767IPR002100Transcription factor, MADS-box
CDDcd002651.32E-31879No hitNo description
SuperFamilySSF554551.83E-26890IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-18929IPR002100Transcription factor, MADS-box
PfamPF003197.6E-231763IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEGKKTKGRR KIEMKIIEKE SDRMVTFSKR RSGINKKASE LVTLCGAEIG MVVFSPAGKP  60
FSFGHPSVES VANRFLQQNP PQAQGDSTHP LMEAQWRLRI NELNQQCDEL FRQLEAEKGR  120
EKVLQELKRA RGSNGWWEVP TKELNFQQLQ QMNESLKEFL KNLCTSMKEK VIAGLPSSSS  180
SCTFLADISE QGTIPFAPND NGTNPPSFPP GYGYN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919048.11e-140agamous-like MADS-box protein AGL61
TrEMBLA0A2N9J3R95e-99A0A2N9J3R9_FAGSY; Uncharacterized protein
STRINGPOPTR_0004s13590.12e-69(Populus trichocarpa)
STRINGXP_006421343.12e-69(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-44AGAMOUS-like 61