PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold10806-abinit-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 413aa    MW: 46087.1 Da    PI: 10.9385
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold10806-abinit-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-08283330448
                                                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
                                   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                                       WT  E  +lvd++ ++G g+W+ I r +      Rt+ +++++w+++l
  snap_masked-scaffold10806-abinit-gene-0.2-mRNA-1 283 WTLSEVMKLVDGISEHGIGRWTDIKRNLFstsAYRTPIDLRDKWRNLL 330
                                                       ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-11273333IPR009057Homeodomain-like
PROSITE profilePS5129410.994275334IPR017930Myb domain
SuperFamilySSF466891.39E-15277368IPR009057Homeodomain-like
SMARTSM007171.1E-7279332IPR001005SANT/Myb domain
CDDcd116601.92E-16281331No hitNo description
PfamPF002491.9E-5283330IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MIWKRHMVSP MHVKIIFLIT VNVILSRLFS ARTDIDFEKV ELISGPRLGS YVGNSSSESQ  60
SPGLSGSSNG AVGISESSTL TIPTSECKNG AINKALTCEL HGGFRSKCGC QTPAEDLASL  120
ELRKFDDFDN DDKSYLEASK IGAVREKRLR KPTRRYIEEV PNKKPKCSKG REKYLAAATK  180
DTSLKVRSHS ELHNVRRRAL TVVHGEKPLR VTSIQSVSEV RARRGRPKKQ ATKQAPILML  240
AISGQGAMAP ESEEEPLSSE SEDDRVTKKK SKKHDRRKHQ RMWTLSEVMK LVDGISEHGI  300
GRWTDIKRNL FSTSAYRTPI DLRDKWRNLL RASGAQKASK KGVEQKQEHA LRPLPTTLLK  360
RVRELAKIHP YPRVRMSKKS SLGQVAPLML PGPSKGAPSN LGGGRTVRRK NCT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023900790.10.0uncharacterized protein LOC112012643 isoform X2
TrEMBLA0A2N9EJ970.0A0A2N9EJ97_FAGSY; Uncharacterized protein
STRINGXP_008243959.11e-108(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.25e-25TRF-like 6