PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold07610-abinit-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 571aa    MW: 64583.7 Da    PI: 6.3885
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold07610-abinit-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.72.5e-1211935701374
                                              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely 61 
                                                       l++ L+ cA+a+s +d++ a   ++ l + +s +g+p+qRl ay++e+L+arl rs+s++y
  snap_masked-scaffold07610-abinit-gene-0.4-mRNA-1 193 LRQGLIYCADAISRDDFTTAVDWMELLGKKVSVSGEPIQRLGAYMLEGLRARLERSGSSIY 253
                                                       5788********************************************************* PP

                                              GRAS  62 kalppsetsekn...sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdi 119
                                                       k+l++ e +++    sse  ++++++++++P+ +f++   N  I e +++e r+HiiDf+i
  snap_masked-scaffold07610-abinit-gene-0.4-mRNA-1 254 KSLKCIEPTSSVeptSSELKSYMTILYQICPYWQFAYKSSNAVIEEVMANEPRIHIIDFQI 314
                                                       ***9999887767867777777888************************************ PP

                                              GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                                                        qG+QW  L+++La Rp+gpp +RiTgv++++s+  +   l  + +rL+k+Ae+++vpfef
  snap_masked-scaffold07610-abinit-gene-0.4-mRNA-1 315 AQGTQWEHLIHSLARRPGGPPFVRITGVDDSQSFhaRGGGLDIVMQRLTKYAESCRVPFEF 375
                                                       ******************************9999889999********************* PP

                                              GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239
                                                       +  +a +  ++  e+L+v+pgEalaVn+ + lh+++desvs++++rd++L+lvkslsPkvv
  snap_masked-scaffold07610-abinit-gene-0.4-mRNA-1 376 HN-AAMSGCEVVRENLNVQPGEALAVNFPYVLHHMPDESVSTQNHRDRLLRLVKSLSPKVV 435
                                                       **.6777777779************************************************ PP

                                              GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                                                       ++veqe+++n+++F++rf e+l+yy+a+f+s+++  pr++++ri+ E+++++r+ivn++ac
  snap_masked-scaffold07610-abinit-gene-0.4-mRNA-1 436 TIVEQESNTNTSPFFARFRETLDYYTAMFESIDVARPRNDKQRISAEQHCVARDIVNMIAC 496
                                                       ************************************************************* PP

                                              GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                                                       e+aer+erhe l+kW +rl++aGF+ +pls+++++ ++ ll++   + yr+e+++g+l+l 
  snap_masked-scaffold07610-abinit-gene-0.4-mRNA-1 497 ENAERVERHELLGKWIRRLSMAGFTLYPLSNSVTNIVNNLLKQQFHENYRLEKRDGALYLS 557
                                                       *****************************************9988899************* PP

                                              GRAS 362 WkdrpLvsvSaWr 374
                                                       W +r++ + SaWr
  snap_masked-scaffold07610-abinit-gene-0.4-mRNA-1 558 WLERNMATSSAWR 570
                                                       ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.351167550IPR005202Transcription factor GRAS
PfamPF035148.6E-119193570IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MKSEVCYLRL ERLMQTSQEQ HSSSSLHGLY HQPLQEIDPY CVQRFQIIEN NVCPDTGSQG  60
TTVSFQPYPE QPQFFTLDSS PATIGYIDCN SPSATSFLSN RSPFSPQVSH SCLSDQHHSP  120
DNTYGSPASG SSVADNGNEF KHKLREIEIS LLGSESGIVD SCHYCPNSGI HKATFAQGLD  180
WNQLVHMDPS LDLRQGLIYC ADAISRDDFT TAVDWMELLG KKVSVSGEPI QRLGAYMLEG  240
LRARLERSGS SIYKSLKCIE PTSSVEPTSS ELKSYMTILY QICPYWQFAY KSSNAVIEEV  300
MANEPRIHII DFQIAQGTQW EHLIHSLARR PGGPPFVRIT GVDDSQSFHA RGGGLDIVMQ  360
RLTKYAESCR VPFEFHNAAM SGCEVVRENL NVQPGEALAV NFPYVLHHMP DESVSTQNHR  420
DRLLRLVKSL SPKVVTIVEQ ESNTNTSPFF ARFRETLDYY TAMFESIDVA RPRNDKQRIS  480
AEQHCVARDI VNMIACENAE RVERHELLGK WIRRLSMAGF TLYPLSNSVT NIVNNLLKQQ  540
FHENYRLEKR DGALYLSWLE RNMATSSAWR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-4920056926378Protein SCARECROW
5b3h_A8e-4920056925377Protein SCARECROW
5b3h_D8e-4920056925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023883288.10.0scarecrow-like protein 13
RefseqXP_023883289.10.0scarecrow-like protein 13
RefseqXP_023883290.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2N9J0030.0A0A2N9J003_FAGSY; Uncharacterized protein
STRINGXP_008227448.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13