PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold07419-abinit-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-YB
Protein Properties Length: 162aa    MW: 17579.9 Da    PI: 7.8786
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold07419-abinit-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB772.8e-24671134894
                                             NF-YB  48 seasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                                                       + asdkcq+ekrktingddllwa+atlGfedy+eplkvyl++yre +
  snap_masked-scaffold07419-abinit-gene-0.8-mRNA-1  67 DRASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREGD 113
                                                       579*****************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008086.8E-56890IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.0E-2168124IPR009072Histone-fold
SuperFamilySSF471134.19E-1668125IPR009072Histone-fold
PRINTSPR006157.6E-117391No hitNo description
PRINTSPR006157.6E-1192110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MADLGVSHLH TCVFVSECFV YRIGLLRVLN FCGERGMAEA PTSPAGGSHD SGGEQSPRST  60
GGVREQDRAS DKCQKEKRKT INGDDLLWAM ATLGFEDYIE PLKVYLARYR EGDSKGSARG  120
GDSSAKRDAV GGLVAQNPQL TVLSSPFALL VNPYCSLRIM RH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-16691115092Transcription factor HapC (Eurofung)
4g92_B3e-16691115092Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023929782.16e-60nuclear transcription factor Y subunit B-1-like
SwissprotQ8VYK43e-36NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A2P5B6J42e-50A0A2P5B6J4_PARAD; Nuclear transcription factor Y subunit B
STRINGcassava4.1_017552m2e-50(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-38nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]