PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold06523-abinit-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 61aa    MW: 7133.39 Da    PI: 10.8392
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold06523-abinit-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.31.3e-30959151
                                                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                                            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                                      krien+++rqv+f+kRrng+lKKA ELSvLCdaeva++ifss+g+lyey+s
  snap_masked-scaffold06523-abinit-gene-0.6-mRNA-1  9 KRIENNTKRQVSFCKRRNGLLKKACELSVLCDAEVALLIFSSRGRLYEYAS 59
                                                      79***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.099161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-29260IPR002100Transcription factor, MADS-box
CDDcd002656.00E-34260No hitNo description
PRINTSPR004042.8E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-303859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MGRRKIEIKR IENNTKRQVS FCKRRNGLLK KACELSVLCD AEVALLIFSS RGRLYEYASN  60
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-20160160Myocyte-specific enhancer factor 2B
1tqe_Q3e-20160160Myocyte-specific enhancer factor 2B
1tqe_R3e-20160160Myocyte-specific enhancer factor 2B
1tqe_S3e-20160160Myocyte-specific enhancer factor 2B
6c9l_A3e-20160160Myocyte-specific enhancer factor 2B
6c9l_B3e-20160160Myocyte-specific enhancer factor 2B
6c9l_C3e-20160160Myocyte-specific enhancer factor 2B
6c9l_D3e-20160160Myocyte-specific enhancer factor 2B
6c9l_E3e-20160160Myocyte-specific enhancer factor 2B
6c9l_F3e-20160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023928415.13e-35agamous-like MADS-box protein AGL11 isoform X1
RefseqXP_023928416.13e-35agamous-like MADS-box protein AGL11 isoform X2
SwissprotQ407043e-31MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLV7BMU33e-30V7BMU3_PHAVU; Uncharacterized protein
STRINGBRADI2G25090.13e-30(Brachypodium distachyon)
STRINGXP_007146364.14e-31(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.24e-33MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]