PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold04021-abinit-gene-0.14-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NF-YB | ||||||||
Protein Properties | Length: 164aa MW: 17843.8 Da PI: 5.3356 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 181.2 | 8.8e-57 | 25 | 119 | 1 | 95 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrk 60 vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrk snap_masked-scaffold04021-abinit-gene-0.14-mRNA-1 25 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 84 69********************************************************** PP NF-YB 61 tingddllwalatlGfedyveplkvylkkyreleg 95 tingddllwa+atlGfedy++plk+yl++yre ++ snap_masked-scaffold04021-abinit-gene-0.14-mRNA-1 85 TINGDDLLWAMATLGFEDYIDPLKIYLARYREGDT 119 *******************************9665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.6E-54 | 20 | 134 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 6.06E-40 | 28 | 138 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.8E-28 | 31 | 95 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.6E-20 | 59 | 77 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 62 | 78 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.6E-20 | 78 | 96 | No hit | No description |
PRINTS | PR00615 | 1.6E-20 | 97 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MAEVPTSPNG GSYEESGDQS PRSNVREQDR FLPIANISRI MKKALPANGK IAKDAKETVQ 60 ECVSEFISFI TSEASDKCQR EKRKTINGDD LLWAMATLGF EDYIDPLKIY LARYREGDTK 120 GSAKGGESSA KKDVQPSPNA QIAHQGSFSQ GVNYATSQYD GGVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 1e-47 | 25 | 116 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 1e-47 | 25 | 116 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023916778.1 | 1e-110 | nuclear transcription factor Y subunit B-10-like | ||||
Refseq | XP_023916779.1 | 1e-110 | nuclear transcription factor Y subunit B-10-like | ||||
Refseq | XP_023916780.1 | 1e-110 | nuclear transcription factor Y subunit B-10-like | ||||
Refseq | XP_023916781.1 | 1e-110 | nuclear transcription factor Y subunit B-10-like | ||||
Refseq | XP_023916782.1 | 1e-110 | nuclear transcription factor Y subunit B-10-like | ||||
Refseq | XP_023916783.1 | 1e-110 | nuclear transcription factor Y subunit B-10-like | ||||
Swissprot | Q67XJ2 | 9e-80 | NFYBA_ARATH; Nuclear transcription factor Y subunit B-10 | ||||
TrEMBL | A0A371HET8 | 1e-101 | A0A371HET8_MUCPR; Nuclear transcription factor Y subunit B-8 (Fragment) | ||||
TrEMBL | A0A445CJ40 | 1e-100 | A0A445CJ40_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA19G36220.2 | 1e-100 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2545 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53340.1 | 4e-82 | nuclear factor Y, subunit B10 |
Publications ? help Back to Top | |||
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