PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold04021-abinit-gene-0.14-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-YB
Protein Properties Length: 164aa    MW: 17843.8 Da    PI: 5.3356
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold04021-abinit-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.28.8e-5725119195
                                              NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrk 60 
                                                        vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrk
  snap_masked-scaffold04021-abinit-gene-0.14-mRNA-1  25 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 84 
                                                        69********************************************************** PP

                                              NF-YB  61 tingddllwalatlGfedyveplkvylkkyreleg 95 
                                                        tingddllwa+atlGfedy++plk+yl++yre ++
  snap_masked-scaffold04021-abinit-gene-0.14-mRNA-1  85 TINGDDLLWAMATLGFEDYIDPLKIYLARYREGDT 119
                                                        *******************************9665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-5420134IPR009072Histone-fold
SuperFamilySSF471136.06E-4028138IPR009072Histone-fold
PfamPF008081.8E-283195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.6E-205977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.6E-207896No hitNo description
PRINTSPR006151.6E-2097115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAEVPTSPNG GSYEESGDQS PRSNVREQDR FLPIANISRI MKKALPANGK IAKDAKETVQ  60
ECVSEFISFI TSEASDKCQR EKRKTINGDD LLWAMATLGF EDYIDPLKIY LARYREGDTK  120
GSAKGGESSA KKDVQPSPNA QIAHQGSFSQ GVNYATSQYD GGVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4725116192Transcription factor HapC (Eurofung)
4g92_B1e-4725116192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916778.11e-110nuclear transcription factor Y subunit B-10-like
RefseqXP_023916779.11e-110nuclear transcription factor Y subunit B-10-like
RefseqXP_023916780.11e-110nuclear transcription factor Y subunit B-10-like
RefseqXP_023916781.11e-110nuclear transcription factor Y subunit B-10-like
RefseqXP_023916782.11e-110nuclear transcription factor Y subunit B-10-like
RefseqXP_023916783.11e-110nuclear transcription factor Y subunit B-10-like
SwissprotQ67XJ29e-80NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLA0A371HET81e-101A0A371HET8_MUCPR; Nuclear transcription factor Y subunit B-8 (Fragment)
TrEMBLA0A445CJ401e-100A0A445CJ40_ARAHY; Uncharacterized protein
STRINGGLYMA19G36220.21e-100(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.14e-82nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]