PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold03349-abinit-gene-0.11-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 435aa MW: 47820.1 Da PI: 6.6841

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold03349-abinit-gene-0.11-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.2	1.5e-37	56	116	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fC++C+ryWt+GG++rnvPvG+grrknk+ snap_masked-scaffold03349-abinit-gene-0.11-mRNA-1 56 PNKILPCPRCNSLETKFCYFNNYNVNQPRHFCRKCQRYWTAGGTIRNVPVGAGRRKNKHL 115 67899*****************************************************97 PP zf-Dof 62 s 62 s snap_masked-scaffold03349-abinit-gene-0.11-mRNA-1 116 S 116 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	42	113	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-31	58	114	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.341	60	114	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	62	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MEESCKGDIP SSLDNQEDTK CQNHPLETEA NVDKKSEEDQ VTNSDIGDQE KVLKRPNKIL 60 PCPRCNSLET KFCYFNNYNV NQPRHFCRKC QRYWTAGGTI RNVPVGAGRR KNKHLSSQCH 120 QVVVPPNVVS VTRADTLTSA SSQHHSCTGL PSSSKGTGEI LKYSKDTPLC ESMANVLNLK 180 EQKGSVEIGS SIVEDNSEEP LSSGSSLAAV TSEESEFSEK EFKPDGLPGH CGNFNPMHTL 240 QCYPVPQWAY HWNQGWHTMM FGLNNCISNS THMSSAPVVP VPGFSAPSIT FPFLPASYWG 300 CMPSWDSRNW NTPLVGSTGS SLASYSTSNS NCTGNSSPIL GKHSRDAKSQ VEDTMEQNLW 360 VPKTLRIDDP EEAAKSSIWS TLGIRPDKDK PIIKGGIFKA FQSKSDTASH TSDANQVLQA 420 NPAAFSRSQS FWEST

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MEESCKGDIP SSLDNQEDTK CQNHPLETEA NVDKKSEEDQ VTNSDIGDQE KVLKRPNKIL  60
PCPRCNSLET KFCYFNNYNV NQPRHFCRKC QRYWTAGGTI RNVPVGAGRR KNKHLSSQCH  120
QVVVPPNVVS VTRADTLTSA SSQHHSCTGL PSSSKGTGEI LKYSKDTPLC ESMANVLNLK  180
EQKGSVEIGS SIVEDNSEEP LSSGSSLAAV TSEESEFSEK EFKPDGLPGH CGNFNPMHTL  240
QCYPVPQWAY HWNQGWHTMM FGLNNCISNS THMSSAPVVP VPGFSAPSIT FPFLPASYWG  300
CMPSWDSRNW NTPLVGSTGS SLASYSTSNS NCTGNSSPIL GKHSRDAKSQ VEDTMEQNLW  360
VPKTLRIDDP EEAAKSSIWS TLGIRPDKDK PIIKGGIFKA FQSKSDTASH TSDANQVLQA  420
NPAAFSRSQS FWEST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023924579.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A2N9HV91	0.0	A0A2N9HV91_FAGSY; Uncharacterized protein
STRING	XP_010266732.1	1e-148	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	8e-70	cycling DOF factor 2