PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold02091-abinit-gene-0.4-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 78aa MW: 9048.5 Da PI: 10.8853 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.2 | 1.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n++ rqvtfskRr g++KKA+ELS+LCda++a+i+fs tgkl+ey+s snap_masked-scaffold02091-abinit-gene-0.4-mRNA-1 9 KKIDNTTARQVTFSKRRRGLFKKAFELSTLCDADIALIVFSATGKLFEYAS 59 68***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.604 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-29 | 2 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.10E-35 | 3 | 66 | No hit | No description |
PRINTS | PR00404 | 3.0E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MTRKKIQIKK IDNTTARQVT FSKRRRGLFK KAFELSTLCD ADIALIVFSA TGKLFEYASS 60 RFQSLVRERE DERPSCSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-21 | 1 | 78 | 1 | 79 | MEF2C |
5f28_B | 6e-21 | 1 | 78 | 1 | 79 | MEF2C |
5f28_C | 6e-21 | 1 | 78 | 1 | 79 | MEF2C |
5f28_D | 6e-21 | 1 | 78 | 1 | 79 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023872463.1 | 1e-35 | MADS-box protein JOINTLESS-like | ||||
Refseq | XP_023872513.1 | 2e-35 | MADS-box protein JOINTLESS-like | ||||
Refseq | XP_023872514.1 | 2e-35 | MADS-box protein JOINTLESS-like | ||||
Refseq | XP_023872515.1 | 2e-35 | MADS-box protein JOINTLESS-like | ||||
Refseq | XP_023872516.1 | 2e-35 | MADS-box protein JOINTLESS-like | ||||
Swissprot | Q9FUY6 | 2e-30 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
TrEMBL | A0A2I4F5I2 | 9e-33 | A0A2I4F5I2_JUGRE; MADS-box protein JOINTLESS-like isoform X2 | ||||
TrEMBL | A0A2I4F5I6 | 9e-33 | A0A2I4F5I6_JUGRE; MADS-box protein JOINTLESS-like isoform X1 | ||||
STRING | cassava4.1_020641m | 1e-35 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 4e-32 | AGAMOUS-like 24 |
Publications ? help Back to Top | |||
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