PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold01775-abinit-gene-0.18-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-YC
Protein Properties Length: 131aa    MW: 14811.8 Da    PI: 4.2957
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold01775-abinit-gene-0.18-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC772.5e-241623899
                                              NF-YC 38 misaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99
                                                       m+sa++P+++skacelfilelt+r+wl++e+++rrt++  dia av   d  dflvd+ p +
  snap_masked-scaffold01775-abinit-gene-0.18-mRNA-1  1 MVSADTPIVFSKACELFILELTVRAWLQTEKCRRRTIQPFDIARAVRLDDHLDFLVDVAPLN 62
                                                       89********************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.02E-15160IPR009072Histone-fold
PfamPF001253.9E-10149IPR007125Histone H2A/H2B/H3
Gene3DG3DSA:1.10.20.106.5E-19159IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MVSADTPIVF SKACELFILE LTVRAWLQTE KCRRRTIQPF DIARAVRLDD HLDFLVDVAP  60
LNQEHYNKEE GSEKESEQTE SLTAESLNLP MMTNVGELFM TNPELSGPYV FAPSMSCAEL  120
ENDPRSKNGL C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-191603594NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023893372.14e-63nuclear transcription factor Y subunit C-2-like
TrEMBLA0A2N9EFZ28e-45A0A2N9EFZ2_FAGSY; Uncharacterized protein
STRINGXP_010108900.15e-31(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143991518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.28e-22nuclear factor Y, subunit C2