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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
snap_masked-scaffold01363-abinit-gene-0.18-mRNA-1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
BBR-BPC |
| Protein Properties |
Length: 288aa MW: 31841.5 Da PI: 10.5087 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| snap_masked-scaffold01363-abinit-gene-0.18-mRNA-1 | genome | THGP | View Nucleic Acid |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 331.9 | 1.8e-101 | 1 | 285 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepa.aslkenlglqlmssiaerdakirernlal..sekkaavaer 56
md d+s + rn+gyyep +slk +lglqlmss++ +++ ir rn+ + +++++++++r
snap_masked-scaffold01363-abinit-gene-0.18-mRNA-1 1 MDGDNSLNmRNWGYYEPPtPSLKGHLGLQLMSSMP-QEQLIRGRNAMViaTGNNGTFHHR 59
899999999*******998***************8.66677666665411567899**** PP
GAGA_bind 57 d.........maflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtks 107
d m++ +rd+++++ ++k++++l++ n +g++vl++t+s
snap_masked-scaffold01363-abinit-gene-0.18-mRNA-1 60 DigathsafpMDY-MRDAWINQ--------REKYINVLPTPN-------PGYSVLPETSS 103
*************.9******9........789999999766.......699******** PP
GAGA_bind 108 idslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkk 167
+++q+ +++ ++++ e + +e++ +a+e+ kkrq ak pk++k+kk+
snap_masked-scaffold01363-abinit-gene-0.18-mRNA-1 104 SHHMQM------VQQPPDMSKDER---MVSVEETGVANESGPIKKRQAAKAPKTPKEKKA 154
****99......344455444443...33345789999********************** PP
GAGA_bind 168 kkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGn 227
k+ ++++k +++ +sa++ + +++k++++v+ gv D+s++P+PvCsCtG+++ CY+WG+
snap_masked-scaffold01363-abinit-gene-0.18-mRNA-1 155 KRAPRAPKAESS-PSAPRARSTTRKTTEIVISGV--DISGIPIPVCSCTGTPQHCYRWGS 211
**8888866655.5556777889********997..89********************** PP
GAGA_bind 228 GGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkd 287
GGWqSaCCtt +S+yPLP+stkrrgaRiagrKmS gafkk+LekLaaeGy++snp+DL++
snap_masked-scaffold01363-abinit-gene-0.18-mRNA-1 212 GGWQSACCTTGMSMYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRT 271
************************************************************ PP
GAGA_bind 288 hWAkHGtnkfvtir 301
hWAkHGtnkfvtir
snap_masked-scaffold01363-abinit-gene-0.18-mRNA-1 272 HWAKHGTNKFVTIR 285
*************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 288 aa
Download sequence Send
to blast |
MDGDNSLNMR NWGYYEPPTP SLKGHLGLQL MSSMPQEQLI RGRNAMVIAT GNNGTFHHRD 60
IGATHSAFPM DYMRDAWINQ REKYINVLPT PNPGYSVLPE TSSSHHMQMV QQPPDMSKDE 120
RMVSVEETGV ANESGPIKKR QAAKAPKTPK EKKAKRAPRA PKAESSPSAP RARSTTRKTT 180
EIVISGVDIS GIPIPVCSCT GTPQHCYRWG SGGWQSACCT TGMSMYPLPM STKRRGARIA 240
GRKMSIGAFK KVLEKLAAEG YNFSNPIDLR THWAKHGTNK FVTIRKGM
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
