PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

snap_masked-scaffold00713-abinit-gene-0.34-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bZIP

Protein Properties

Length: 279aa MW: 30739.4 Da PI: 9.1088

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
snap_masked-scaffold00713-abinit-gene-0.34-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.8	2.7e-14	208	252	4	48
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 ++r+rrk+kNRe+A rsR+RK+a+ eL kv Le+eN +Lkke snap_masked-scaffold00713-abinit-gene-0.34-mRNA-1 208 DRRQRRKIKNRESAARSRARKQAYHNELVSKVSCLEEENIKLKKE 252 68****************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.3E-10	204	269	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.68	207	252	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-12	209	252	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.3E-13	209	255	No hit	No description
SuperFamily	SSF57959	4.5E-11	209	255	No hit	No description
CDD	cd14707	4.96E-17	209	262	No hit	No description
PROSITE pattern	PS00036	0	212	227	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MGTQGNGQQV QQSHHLQPSP LTRQSSWYSL TLDEIKNHLG DTGKPVGSMN LDELLQNVWT 60 TDMATIAGEA NQIQSNENTS SSSSSLQRQA SLTLAKALRG KTVDQVWREI QQGQKKRCGG 120 GDIKVQGLDD TNSSMTLGET TLEDFLVQAG LFAEPSIAPP PPSGLGIVEV VTPQKMVLSS 180 SSSFGTLSDT PMQGQKRDAS DAFERILDRR QRRKIKNRES AARSRARKQA YHNELVSKVS 240 CLEEENIKLK KEKARNLSSA SHILFVKSEY INSRLSEVD

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023914551.1	1e-164	ABSCISIC ACID-INSENSITIVE 5-like protein 3
Swissprot	Q9LES3	1e-49	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A251NSR3	1e-109	A0A251NSR3_PRUPE; Uncharacterized protein
STRING	EMJ07855	1e-109	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12464	25	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	5e-44	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]