PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID snap_masked-scaffold00318-abinit-gene-0.23-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 862aa    MW: 95418.3 Da    PI: 6.0762
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
snap_masked-scaffold00318-abinit-gene-0.23-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031747772123
                                                        EEET..TTTEEESSHHHHHHHHHH.T CS
                                            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                                                        +kC    C +sF++k +L  H r+ +
  snap_masked-scaffold00318-abinit-gene-0.23-mRNA-1 747 HKCDleGCRMSFKTKAELLLHKRNrC 772
                                                        789999****************9877 PP
2zf-C2H2120.00063830856123
                                                        EEET..TTTEEESSHHHHHHHHHH..T CS
                                            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                                                        ykC+   Cg sF+  s++ rH r+  H
  snap_masked-scaffold00318-abinit-gene-0.23-mRNA-1 830 YKCKveGCGLSFRFVSDYSRHRRKtgH 856
                                                        99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035512747769IPR015880Zinc finger, C2H2-like
SMARTSM003550.17770794IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.96E-5770807No hitNo description
PROSITE profilePS5015711.884770799IPR007087Zinc finger, C2H2
PROSITE patternPS000280772794IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-4772796IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.604.9E-10798824IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0025800824IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.655800829IPR007087Zinc finger, C2H2
PROSITE patternPS000280802824IPR007087Zinc finger, C2H2
SuperFamilySSF576671.67E-10810852No hitNo description
Gene3DG3DSA:3.30.160.602.4E-11825853IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.33830856IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993830861IPR007087Zinc finger, C2H2
PROSITE patternPS000280832856IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
MKAHAVAVSE EIGKPFDYNE VPLDTASQED LNLIDLAIDD EEHDECGEDW TSKLGINLRY  60
CAKVRKNSPS MQIRHALTLG GLFSEKSVTS ECLTVKWRSK RSRSRKSNHS SHGKVCDTAQ  120
LKKDEVLGGR SNGIIVNNEK KLIQYSRRNP KLKLGGSTGA STVDACPGKN LSKDVSAATY  180
GDRNKQSGKA TENDLSNKGN SKSDAGFVFS SASGVSEMQH ESSGFAATSG SSLNSAPSRI  240
EDSLASDTLV VVETQSENHT LDDFDIDGKA CNGATWDGSE MQHKIKSTDE TKEECKITYA  300
EKCGSPLIIA TDERSGLLAE NRSMEKISIT NGSCHLVSEG DVVMNEVSDL SKPPTPNVAD  360
PVVRNFEAQV ENVLLEESCV NNEVQQKVHT TSRIEYDGPL SSNVAPINRL TLASTEGVSC  420
NIAVTNQPTL ASMQESCEGP TEIHAAEDIS MEQELESENG SNEDERVSSY VTLTNEPTPA  480
SREIHSPDRN NEQLVSSSVL PMEVSQPCVS LEQCPEVPRG CSAEEDLHDG VTLEVQQDIQ  540
ISDGTDEGMP VPSFITQVEK EPVTISGGEC YKVPRGIHAE ENLSDGVALY NEVEQKRELK  600
NENDEEISEY DTLINSPSPA TIKKCSRIKR DTHVAENLLR KEVCSSQDDR ELESIESTLL  660
EPRSSRDKRR KRKRKREADH LTENKFGCSD FIRSPCEGLR PRAGKDATSR CGIDTSKIVE  720
EKLVRKKVSK PSDVPLPPKN KNSTGSHKCD LEGCRMSFKT KAELLLHKRN RCPHEGCGKR  780
FSNHKYAMLH KRVHDDDRPL KCPWKGCTMS FKWAWARTEH IRVHTGERPY KCKVEGCGLS  840
FRFVSDYSRH RRKTGHYVNL PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A5e-5274585821134Lysine-specific demethylase REF6
6a58_A5e-5274585821134Lysine-specific demethylase REF6
6a59_A5e-5274585821134Lysine-specific demethylase REF6
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104KRSRSR
2667675KRRKRKRKR
3668673RRKRKR
4668674RRKRKRK
5669674RKRKRK
6669675RKRKRKR
7669676RKRKRKRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913552.10.0probable lysine-specific demethylase ELF6
TrEMBLA0A2N9ER000.0A0A2N9ER00_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-62C2H2 family protein