PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | snap_masked-scaffold00136-abinit-gene-1.12-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | bZIP | ||||||||
Protein Properties | Length: 261aa MW: 28611.2 Da PI: 4.4984 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.3 | 2.2e-10 | 137 | 182 | 2 | 47 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 + +k+ rr +NR AA rsR+RKk+++ Le k+ Le+e ++L snap_masked-scaffold00136-abinit-gene-1.12-mRNA-1 137 PTSKKRRRQLRNRDAAVRSRERKKMYVRDLELKSRYLEGECRRLGH 182 5789************************************988764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.0E-11 | 134 | 196 | No hit | No description |
SMART | SM00338 | 5.0E-6 | 136 | 200 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.0E-8 | 138 | 185 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.76 | 138 | 180 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.25E-10 | 140 | 196 | No hit | No description |
CDD | cd14704 | 3.24E-17 | 141 | 192 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 143 | 158 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0030968 | Biological Process | endoplasmic reticulum unfolded protein response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDDADFLNDE ILQKIDWDCF FDDFPEDGNG FSLEPMGLPD SVSPGIDEIQ TFLMNDDNDN 60 NNNSGLAEPS IEFCDSFFAD IIVNSPVEAS GEVVDASSRI DKDSSGDSDD GNGSSVKEKV 120 DNDDQTQDDD NDGADDPTSK KRRRQLRNRD AAVRSRERKK MYVRDLELKS RYLEGECRRL 180 GHLLQCCVAE NQALRLSLHS GSAFGASATK QEIPAVGFPA LVPGHHVPIQ SASNAPVNPG 240 NSSTRKRGTG KPRNSSKRGK K |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 140 | 159 | KRRRQLRNRDAAVRSRERKK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00019 | PBM | Transfer from AT1G42990 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023918417.1 | 1e-104 | bZIP transcription factor 60 | ||||
TrEMBL | A0A2N9ITV3 | 1e-122 | A0A2N9ITV3_FAGSY; Uncharacterized protein | ||||
STRING | XP_002510740.1 | 2e-55 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12009 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G42990.1 | 2e-16 | basic region/leucine zipper motif 60 |