PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold28796-augustus-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 266aa    MW: 30663 Da    PI: 4.9492
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold28796-augustus-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-141461148
                                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                  +g+W+ eEd +l  +v+++G  +W+  ++  g+ R++k+c++rw +yl
  maker-scaffold28796-augustus-gene-0.2-mRNA-1 14 KGAWSVEEDNKLRSYVQRFGHWNWRELPKFAGLSRCGKSCRLRWMNYL 61
                                                  79******************99************************97 PP
2Myb_DNA-binding52.51.1e-1667111147
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                   rg+ T+eE++ +++++++lG++ W+ Ia+ ++ gR+++++k++w+ +
  maker-scaffold28796-augustus-gene-0.2-mRNA-1  67 RGNYTEEEELMIIKLHEELGNK-WSMIAASLP-GRSDNDIKNHWHAH 111
                                                   899*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.877961IPR017930Myb domain
SuperFamilySSF466894.77E-3011108IPR009057Homeodomain-like
SMARTSM007176.5E-111363IPR001005SANT/Myb domain
PfamPF002491.5E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-221568IPR009057Homeodomain-like
CDDcd001671.82E-81661No hitNo description
PROSITE profilePS5129423.93862116IPR017930Myb domain
SMARTSM007176.3E-1666114IPR001005SANT/Myb domain
PfamPF002495.2E-1567111IPR001005SANT/Myb domain
CDDcd001679.40E-1169112No hitNo description
Gene3DG3DSA:1.10.10.607.2E-2569115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVRAPFYDKN GLKKGAWSVE EDNKLRSYVQ RFGHWNWREL PKFAGLSRCG KSCRLRWMNY  60
LQPGVKRGNY TEEEELMIIK LHEELGNKWS MIAASLPGRS DNDIKNHWHA HLKKRTKKNP  120
TTSKMITLSN EAYQHDADIA RKTEIDSSVS SSPSYQVQES SQLPVETSYS EFSNLSIDNA  180
PLSSINWTAE DSLATLETLE QSFSDFWTEP FILDNTYIQN NYLEPLADGG FSASQSCYNE  240
GIDSIYEAMQ EVENYQRINE DPYLVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023881680.10.0transcription factor MYB13-like
SwissprotQ6R0A63e-52MYB63_ARATH; Transcription factor MYB63
TrEMBLA0A2N9J0V51e-135A0A2N9J0V5_FAGSY; Uncharacterized protein
STRINGPOPTR_0019s14130.12e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.17e-54myb domain protein 14
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]