PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold23274-augustus-gene-0.3-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 170aa MW: 19279.7 Da PI: 6.4906 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.8 | 1.4e-36 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65 +CaaCk lrr+C+kdCvlapyfp ++p+++a+vhk+FGasn +k+l++lp + r a++++ +eA maker-scaffold23274-augustus-gene-0.3-mRNA-1 6 RCAACKSLRRRCPKDCVLAPYFPPTNPQRYACVHKIFGASNTTKMLEQLPLHLRAVAADCMSFEA 70 6**************************************************************** PP DUF260 66 earardPvyGavgvilklqqqleqlkaelallkee 100 r+ dPvyG+v++i++lq+q+ ++++el+++k e maker-scaffold23274-augustus-gene-0.3-mRNA-1 71 SSRVGDPVYGSVRIISQLQEQIIEAQSELVKTKGE 105 *****************************999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.225 | 5 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-35 | 6 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 170 aa Download sequence Send to blast |
MSHSTRCAAC KSLRRRCPKD CVLAPYFPPT NPQRYACVHK IFGASNTTKM LEQLPLHLRA 60 VAADCMSFEA SSRVGDPVYG SVRIISQLQE QIIEAQSELV KTKGEIAFHN AQQQLQQQQM 120 QQLQMINAVD QQGEDQPSWL SSSQQDPFTN VNQQLLEDYN YSNTFCGFEF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-32 | 7 | 106 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-32 | 7 | 106 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023929826.1 | 1e-101 | LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 2e-43 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A1U8B9X8 | 2e-61 | A0A1U8B9X8_NELNU; LOB domain-containing protein 24-like | ||||
STRING | XP_010278070.1 | 3e-62 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-44 | LOB domain-containing protein 24 |