PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold19378-snap-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CAMTA
Protein Properties Length: 132aa    MW: 15176 Da    PI: 10.7128
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold19378-snap-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-181.31.1e-25451143088
                                      CG-1  30 lktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg...........vevlycyYah 87 
                                               ++ +   gsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LKvg+            e+l+c+ a 
  maker-scaffold19378-snap-gene-0.6-mRNA-1  45 RHGNTIHGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKVGTrhhekivlpfrLEALMCCTAT 113
                                               4445678*****************************************999999999999999999876 PP

                                      CG-1  88 s 88 
                                                
  maker-scaffold19378-snap-gene-0.6-mRNA-1 114 M 114
                                               5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010763.7E-719112IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143727.53624132IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-184093IPR005559CG-1 DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MGGLVYVGEG LLIGKVQCVY NSKLTALEMN TIKSIGRANR IKEIRHGNTI HGSLFLFDRK  60
VLRYFRKDGH NWRKKKDGKT VKEAHERLKV GTRHHEKIVL PFRLEALMCC TATMPMEKTM  120
KIFKDAVIGY SK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4345407e-42AM434540.2 Vitis vinifera contig VV78X210461.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020975838.13e-26calmodulin-binding transcription activator 3-like isoform X2
TrEMBLA0A438KPN71e-32A0A438KPN7_VITVI; Calmodulin-binding transcription activator 3
STRINGXP_002519355.13e-26(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3176222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.22e-23Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains