PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold18721-augustus-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Dof
Protein Properties Length: 465aa    MW: 51853.7 Da    PI: 9.6974
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold18721-augustus-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.84.9e-3874133362
                                        zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                                                   e+alkcprCds+ntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGg +r+nk+s+
  maker-scaffold18721-augustus-gene-0.3-mRNA-1  74 ETALKCPRCDSSNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGDCRRNKRSK 133
                                                   6789*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-3757126IPR003851Zinc finger, Dof-type
PfamPF027015.3E-3276131IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.20877131IPR003851Zinc finger, Dof-type
PROSITE patternPS01361079115IPR003851Zinc finger, Dof-type
Gene3DG3DSA:1.20.1510.102.5E-31171362IPR027469Cation efflux protein transmembrane domain
SuperFamilySSF1611111.29E-32171364No hitNo description
PfamPF015452.9E-22178362IPR002524Cation efflux protein
Gene3DG3DSA:3.30.70.13503.4E-6365441IPR027470Cation efflux protein, cytoplasmic domain
SuperFamilySSF1602401.31E-8367441No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006812Biological Processcation transport
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008324Molecular Functioncation transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MVFSSLPAYL DPANWQQQQN HPTGTSSAAS SHLLPLPPPP PPPPQPHMGG GGAGSIRPGS  60
MADRARMANI PMPETALKCP RCDSSNTKFC YFNNYSLTQP RHFCKTCRRY WTRGGALRNV  120
PVGGDCRRNK RSKGSSSSKS PASSADRQSA SAGSASSIPS HSGAGDMIGE RMAIRVTNIA  180
NIVLFALKVS ASIESKSLSI IAAILDPFFD LLWGFILWLT SHAMQNPNPH KYPIGKERMQ  240
PVGMIVFGSF GLQLLFLAAK QFITKSKPTK DPQKQKWMIG VMTFVTMVDF MLAFYCRRFE  300
NKIVRAYAEH HSSNVKTNLI SLAAAVLAIR YYWWIDPTGA IIILLYTMHS WKKTFFENLF  360
ALIGRTAPPE ILDRLTSLVL EHHEDIKQIG RLTAYTSGPD QYFVEVDIVL PQDMVQSKTR  420
DIVGTLQVKL SQLPEVARAF VREYDSRAEH RIMVDDKDDD EDCKN
Functional Description ? help Back to Top
Source Description
UniProtInvolved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023887352.11e-122metal tolerance protein 9-like
SwissprotQ0WU026e-99MTP10_ARATH; Metal tolerance protein 10
TrEMBLA0A2N9I6H81e-121A0A2N9I6H8_FAGSY; Uncharacterized protein
TrEMBLA0A2N9IGC51e-121A0A2N9IGC5_FAGSY; Uncharacterized protein
STRINGGLYMA15G41580.11e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.14e-46DNA binding with one finger 2.4
Publications ? help Back to Top
  1. Delhaize E, et al.
    A role for the AtMTP11 gene of Arabidopsis in manganese transport and tolerance.
    Plant J., 2007. 51(2): p. 198-210
    [PMID:17559518]