PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold18039-snap-gene-0.4-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HSF
Protein Properties Length: 389aa    MW: 45155.9 Da    PI: 4.4236
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold18039-snap-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.2e-34161092102
                                               HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---S CS
                              HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkde 68 
                                               Fl+k ye+++de+++++isw+  e+ nsfv++d++ef+ k+Lp yFkh+nf+SF+RQLn+YgF+k++++
  maker-scaffold18039-snap-gene-0.4-mRNA-1  16 FLTKCYEMVDDEATDSIISWTqpESCNSFVIWDMTEFSVKLLPLYFKHNNFSSFMRQLNIYGFRKIDTD 84 
                                               9********************76677*****************************************99 PP

                                               SBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                              HSF_DNA-bind  69 ekkskskekiweFkhksFkkgkkellekikrkks 102
                                               +         weF+++ F +g+k+ll++i r+k+
  maker-scaffold18039-snap-gene-0.4-mRNA-1  85 R---------WEFANDGFVRGQKHLLKNISRRKK 109
                                               9.........*********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.77E-3112107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5212107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3412107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.9E-181639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-2916107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.9E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MVRKSKENGS DSVAPFLTKC YEMVDDEATD SIISWTQPES CNSFVIWDMT EFSVKLLPLY  60
FKHNNFSSFM RQLNIYGFRK IDTDRWEFAN DGFVRGQKHL LKNISRRKKL QQLDNSDGPA  120
ENIENVGLWK EVENLKTDKN LVMQELIKLR QHQETSDNKL LLLRDRLQGM ETNQQQMLSF  180
LVMAMQSPGI LVQLLQPKEK NWRMLEEGKE DDRPVASDGT IVRYQPPVSE TPKPLHTVTP  240
SSEKQQESDP STDGMKDFFL CPDFMKMLMD EKTCSLDTHA PFMLPDSPDD GAWEQLLLAS  300
PFLENDEDRK MDDEELIDSE MEMESTESKS QLEMSQNFER LMEQMEKSQY LGMESSIDKA  360
HLDKSQNLEF LTEQMGLLSS ERNNEHASQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-23910722129Heat shock factor protein 1
5d5v_B5e-23910722129Heat shock factor protein 1
5d5v_D5e-23910722129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876599.10.0heat stress transcription factor A-8
SwissprotQ9S7U51e-105HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A2I4FXW20.0A0A2I4FXW2_JUGRE; heat stress transcription factor A-8
STRINGXP_008220924.11e-169(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-107heat shock transcription factor A8