PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold16749-augustus-gene-0.4-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WOX
Protein Properties Length: 306aa    MW: 35115.6 Da    PI: 6.3223
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold16749-augustus-gene-0.4-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox681.2e-21126186257
                                                   T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                                      Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                                   r+R+t+t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  maker-scaffold16749-augustus-gene-0.4-mRNA-1 126 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELgqhgQISETNVYNWFQNRRARSKR 186
                                                   89*****************99**************************************97 PP

2Wus_type_Homeobox100.41.3e-32125188265
                             Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                                   +r+RWtPtp Q++iLe+++++G  tP+k++i++it+eL ++G+i+++NV++WFQNr+aR+++kq
  maker-scaffold16749-augustus-gene-0.4-mRNA-1 125 SRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELGQHGQISETNVYNWFQNRRARSKRKQ 188
                                                   789***********************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-18121191IPR009057Homeodomain-like
PROSITE profilePS5007115.273122187IPR001356Homeobox domain
SMARTSM003893.0E-16124191IPR001356Homeobox domain
SuperFamilySSF466892.78E-19124189IPR009057Homeodomain-like
CDDcd000861.01E-14126188No hitNo description
PfamPF000461.9E-19126186IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTEFNMMEWE KQGHPHPHHH HHHQHQQHQQ HQQQQQQERE EQQNGNVGNN IEVNGNGNGG  60
MLYVKVMTDD QLETLRKQIA LYASICEQLV EMHKNLTAQQ DLAGVRLGNL YCDPLMTSAG  120
HKITSRQRWT PTPVQLQILE RIFDQGNGTP SKQKIKEITS ELGQHGQISE TNVYNWFQNR  180
RARSKRKQQN SAPNNGESEV ETEVDSPKDK KTKPEEFHSQ QNSDPRAEDL CFQNPEISSD  240
LHFLDPQSSK AEAMFPSDDG LKPARSLSQI SFYDGLLSNS RNDHLNGKME VPGNYGLYQH  300
SEDYGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179187RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023893569.10.0WUSCHEL-related homeobox 13
SwissprotO817881e-94WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A2I4HNG11e-176A0A2I4HNG1_JUGRE; WUSCHEL-related homeobox 13
STRINGXP_008241933.11e-151(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.13e-96WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]