PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold16749-augustus-gene-0.4-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

WOX

Protein Properties

Length: 306aa MW: 35115.6 Da PI: 6.3223

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold16749-augustus-gene-0.4-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68	1.2e-21	126	186	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ maker-scaffold16749-augustus-gene-0.4-mRNA-1 126 RQRWTPTPVQLQILERIFDQgNGTPSKQKIKEITSELgqhgQISETNVYNWFQNRRARSKR 186 89***************99************************************97 PP
2	Wus_type_Homeobox	100.4	1.3e-32	125	188	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iLe+++++G tP+k++i++it+eL ++G+i+++NV++WFQNr+aR+++kq maker-scaffold16749-augustus-gene-0.4-mRNA-1 125 SRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITSELGQHGQISETNVYNWFQNRRARSKRKQ 188 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-18	121	191	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.273	122	187	IPR001356	Homeobox domain
SMART	SM00389	3.0E-16	124	191	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.78E-19	124	189	IPR009057	Homeodomain-like
CDD	cd00086	1.01E-14	126	188	No hit	No description
Pfam	PF00046	1.9E-19	126	186	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MTEFNMMEWE KQGHPHPHHH HHHQHQQHQQ HQQQQQQERE EQQNGNVGNN IEVNGNGNGG 60 MLYVKVMTDD QLETLRKQIA LYASICEQLV EMHKNLTAQQ DLAGVRLGNL YCDPLMTSAG 120 HKITSRQRWT PTPVQLQILE RIFDQGNGTP SKQKIKEITS ELGQHGQISE TNVYNWFQNR 180 RARSKRKQQN SAPNNGESEV ETEVDSPKDK KTKPEEFHSQ QNSDPRAEDL CFQNPEISSD 240 LHFLDPQSSK AEAMFPSDDG LKPARSLSQI SFYDGLLSNS RNDHLNGKME VPGNYGLYQH 300 SEDYGM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	187	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023893569.1	0.0	WUSCHEL-related homeobox 13
Swissprot	O81788	1e-94	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A2I4HNG1	1e-176	A0A2I4HNG1_JUGRE; WUSCHEL-related homeobox 13
STRING	XP_008241933.1	1e-151	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-96	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]