PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold15072-augustus-gene-0.5-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 303aa    MW: 32495.6 Da    PI: 4.5154
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold15072-augustus-gene-0.5-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001277300123
                                                   EEETTTTEEESSHHHHHHHHHH.T CS
                                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                                   ++C+ C+k+F +   L++H +  H
  maker-scaffold15072-augustus-gene-0.5-mRNA-2 277 FSCQTCSKTFGSEVGLQSHTKAkH 300
                                                   89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.78277303IPR007087Zinc finger, C2H2
SMARTSM003550.0084277300IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280279300IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
VEVKAGQPLK VSPGEEKLIH LSQASLGESK NKGNESTPIF VKFGDQKLVL GTLSQEKFPQ  60
LSFDLVFEKE FELSHNWKNG SVYFAGLFPS KLSVVSLTLW SLVFATEPAT DSDMDSFDDE  120
EEEELPLNIA ENGKAGPKVA AVKSIAAPSE KQVKISEPSK DDEDNDSSDS SDEDDDDDIS  180
GDEDEDMSFG SAEDDDESDE EPEETPKKVE SSKKRPSESA TKTPVPAKKA KAATPQKTDG  240
KKVGGHTATP HPSKKAAKTP ATSEQSKQKS PKSGGAFSCQ TCSKTFGSEV GLQSHTKAKH  300
AGN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT9466296e-39KT946629.1 Quercus velutina isolate 2906 histone deacetylase-like protein gene, partial sequence.
GenBankKT9466306e-39KT946630.1 Quercus velutina isolate 2907 histone deacetylase-like protein gene, partial sequence.
GenBankKT9466326e-39KT946632.1 Quercus velutina isolate 2910 histone deacetylase-like protein gene, partial sequence.
GenBankKT9466336e-39KT946633.1 Quercus velutina isolate 2919 histone deacetylase-like protein gene, partial sequence.
GenBankKT9466346e-39KT946634.1 Quercus ellipsoidalis isolate JW50 histone deacetylase-like protein gene, partial sequence.
GenBankKT9466356e-39KT946635.1 Quercus ellipsoidalis isolate JW51 histone deacetylase-like protein gene, partial sequence.
GenBankKT9466366e-39KT946636.1 Quercus ellipsoidalis isolate JW52 histone deacetylase-like protein gene, partial sequence.
GenBankKT9466376e-39KT946637.1 Quercus ellipsoidalis isolate JW53 histone deacetylase-like protein gene, partial sequence.
GenBankKT9466386e-39KT946638.1 Quercus rubra isolate 2898 histone deacetylase-like protein gene, partial sequence.
GenBankKT9466396e-39KT946639.1 Quercus velutina isolate 2521 histone deacetylase-like protein gene, partial sequence.
GenBankKT9466406e-39KT946640.1 Quercus coccinea isolate 2582 histone deacetylase-like protein gene, partial sequence.
GenBankKT9466416e-39KT946641.1 Quercus coccinea isolate 2583 histone deacetylase-like protein gene, partial sequence.
GenBankKT9466426e-39KT946642.1 Quercus coccinea isolate 2584 histone deacetylase-like protein gene, partial sequence.
GenBankKT9466436e-39KT946643.1 Quercus rubra isolate PR01 histone deacetylase-like protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023890901.11e-153histone deacetylase HDT1-like
TrEMBLA0A2N9GBX21e-108A0A2N9GBX2_FAGSY; Uncharacterized protein
STRINGVIT_06s0061g01240.t015e-83(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.29e-33histone deacetylase 3