PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold14802-snap-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 303aa    MW: 34045.2 Da    PI: 5.6469
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold14802-snap-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.63.9e-31126184259
                                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                               +D ++WrKYGqK++kgs++prsYYrC+s+ gCp++k+vers+ dp+v++itY++eHnh+
  maker-scaffold14802-snap-gene-0.6-mRNA-1 126 SDMWSWRKYGQKPIKGSPYPRSYYRCSSSkGCPARKQVERSHLDPEVFIITYSSEHNHS 184
                                               79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-31111186IPR003657WRKY domain
PROSITE profilePS5081132.569120186IPR003657WRKY domain
SuperFamilySSF1182904.58E-26121186IPR003657WRKY domain
SMARTSM007743.6E-36125185IPR003657WRKY domain
PfamPF031065.1E-27127183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSDFACMEDW GLQAVVRGYI NEAPTTTLAN PNSCFAPLSG VEDDPLSFPE ISETTTVLDE  60
LEKLYNPVLH PVSSQTMLVS SISVPKEAKK PDKQPSRKET ATTYIRSRKN QHKRVVQHVR  120
AEGLCSDMWS WRKYGQKPIK GSPYPRSYYR CSSSKGCPAR KQVERSHLDP EVFIITYSSE  180
HNHSHPTRRN SLAGSTRSKL PTSRKKGKSS TSPTAPLMSS SIENEFVQST SIKIEELEQT  240
TVQDNEGNDI VIPDLDKELF PCLEDFDELI TEEPALDVCF LDQLLELCPP WFIDNSTTTS  300
HGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-19114186274WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023870447.10.0probable WRKY transcription factor 29
TrEMBLA0A2N9ISE11e-145A0A2N9ISE1_FAGSY; Uncharacterized protein
STRINGXP_009343869.12e-85(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.13e-46WRKY family protein