PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold13586-augustus-gene-0.8-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 171aa MW: 19899.6 Da PI: 9.2522 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 124.4 | 9.3e-39 | 9 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFsk 63 lppG+rF+P+d e++ yLkkk++g++ ++ +i+e++ yk ePwdLp k +++e++ew+fF++ maker-scaffold13586-augustus-gene-0.8-mRNA-1 9 LPPGVRFSPKDPEVIELYLKKKITGNDEDT-WFIPEIEFYKDEPWDLPiKsGIATEDQEWFFFTE 72 79*************************888.78**************96347777999******* PP NAM 64 rdkkya...........tgkrknratksgyWkatgkdkevlskkgelvglkktLvfy...kgrap 114 ++ k++ +++r +r+tk+gyWk+tg+d+e++s +++l+g+kktLvf+ ++ ++ maker-scaffold13586-augustus-gene-0.8-mRNA-1 73 QSLKQQddnpkkrkrdqKQERVSRKTKAGYWKSTGTDREIKS-GESLIGMKKTLVFHigtTKGKE 136 *999994444433333223355555*****************.999***********76655778 PP NAM 115 kgektdWvmheyrl 128 kg t+Wvmhey+ maker-scaffold13586-augustus-gene-0.8-mRNA-1 137 KGIGTKWVMHEYST 150 999*********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-40 | 6 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.185 | 9 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-24 | 10 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MEKLSLDHLP PGVRFSPKDP EVIELYLKKK ITGNDEDTWF IPEIEFYKDE PWDLPIKSGI 60 ATEDQEWFFF TEQSLKQQDD NPKKRKRDQK QERVSRKTKA GYWKSTGTDR EIKSGESLIG 120 MKKTLVFHIG TTKGKEKGIG TKWVMHEYST TQKDFDGKHP GQIVLPPKSL E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-26 | 9 | 148 | 17 | 140 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-26 | 9 | 148 | 17 | 140 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-26 | 9 | 148 | 17 | 140 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-26 | 9 | 148 | 17 | 140 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-26 | 4 | 148 | 15 | 143 | NAC domain-containing protein 19 |
3swm_B | 2e-26 | 4 | 148 | 15 | 143 | NAC domain-containing protein 19 |
3swm_C | 2e-26 | 4 | 148 | 15 | 143 | NAC domain-containing protein 19 |
3swm_D | 2e-26 | 4 | 148 | 15 | 143 | NAC domain-containing protein 19 |
3swp_A | 2e-26 | 4 | 148 | 15 | 143 | NAC domain-containing protein 19 |
3swp_B | 2e-26 | 4 | 148 | 15 | 143 | NAC domain-containing protein 19 |
3swp_C | 2e-26 | 4 | 148 | 15 | 143 | NAC domain-containing protein 19 |
3swp_D | 2e-26 | 4 | 148 | 15 | 143 | NAC domain-containing protein 19 |
4dul_A | 2e-26 | 9 | 148 | 17 | 140 | NAC domain-containing protein 19 |
4dul_B | 2e-26 | 9 | 148 | 17 | 140 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023913060.1 | 1e-108 | protein NTM1-like 9 isoform X3 | ||||
TrEMBL | A0A2I4F938 | 6e-48 | A0A2I4F938_JUGRE; LOW QUALITY PROTEIN: NAC domain-containing protein 91-like | ||||
TrEMBL | A0A2N9EGM8 | 3e-47 | A0A2N9EGM8_FAGSY; Uncharacterized protein | ||||
STRING | XP_008376843.1 | 4e-43 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 2e-39 | NAC transcription factor-like 9 |