PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold12160-augustus-gene-0.5-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CO-like
Protein Properties Length: 403aa    MW: 44014 Da    PI: 5.0807
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold12160-augustus-gene-0.5-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.41.2e-074386441
                                      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                                                    C++++++++   C + +  lC++C  ++H g       H++++
  maker-scaffold12160-augustus-gene-0.5-mRNA-2 43 LLCERCNSQPALVRCAEEKLSLCQNCDWTGH-GaststssHKRQT 86
                                                  57*****************************.5588888898876 PP
2CCT62.41.4e-21346389144
                                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                                   R  a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ 
  maker-scaffold12160-augustus-gene-0.5-mRNA-2 346 RSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 389
                                                   889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.1864087IPR000315B-box-type zinc finger
CDDcd000211.89E-54487No hitNo description
PROSITE profilePS5101715.418346388IPR010402CCT domain
PfamPF062032.0E-16346388IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
VVRTLGRIVI CEGAIFDAAC LCLSCDRNVH SANALSKRHS RTLLCERCNS QPALVRCAEE  60
KLSLCQNCDW TGHGASTSTS SHKRQTINCY SGCPSAAELS SIWSFVLDSP SVGESTCEQE  120
MGLMSLTENG EKNAWGPSEN NMSQNVSSSV ELNDVRGMDK SNVWVASSLA PAVNSTPHIL  180
DQPVGPSKAS LPKLCCPGTK DSELSEENDF YDDFNMDEVD LNFENYEELF GVSLSHSEEL  240
FENGGIDSLF GMKEMSAAEG SSVGHFNSTQ PACSNAASAD SIVSTKTEPI LCFTARQGQS  300
NLSFSGLTGE SSPGDYQDCG ASSMLLMGEP PWCPPCPENS FQSANRSDAV MRYKEKKKTR  360
KFEKRVRYAS RKARADVRKR VKGRFVKAGE NYDYDPLSQT RSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916920.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_023916921.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_023916922.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_023916923.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-140COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2I4FNT90.0A0A2I4FNT9_JUGRE; zinc finger protein CONSTANS-LIKE 9-like
STRINGEOX935730.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-113CONSTANS-like 9