PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold12160-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CO-like
Protein Properties Length: 406aa    MW: 44516.4 Da    PI: 4.9912
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold12160-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box192.9e-06544639
                                      zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                                  C+ ++e++   +C+++  +lC +C  + H+       H++
  maker-scaffold12160-augustus-gene-0.5-mRNA-1  5 CDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                                                  *****************************65677777765 PP
2zf-B_box23.61.1e-074689441
                                      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                                                    C++++++++   C + +  lC++C  ++H g       H++++
  maker-scaffold12160-augustus-gene-0.5-mRNA-1 46 LLCERCNSQPALVRCAEEKLSLCQNCDWTGH-GaststssHKRQT 89
                                                  57*****************************.5588888898876 PP
3CCT62.41.4e-21349392144
                                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                                   R  a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ 
  maker-scaffold12160-augustus-gene-0.5-mRNA-1 349 RSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 392
                                                   889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.584147IPR000315B-box-type zinc finger
CDDcd000215.46E-8447No hitNo description
SMARTSM003361.8E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1864390IPR000315B-box-type zinc finger
CDDcd000213.85E-54790No hitNo description
SMARTSM003360.724890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.418349391IPR010402CCT domain
PfamPF062032.0E-16349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGYLCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPALVRC  60
AEEKLSLCQN CDWTGHGAST STSSHKRQTI NCYSGCPSAA ELSSIWSFVL DSPSVGESTC  120
EQEMGLMSLT ENGEKNAWGP SENNMSQNVS SSVELNDVRG MDKSNVWVAS SLAPAVNSTP  180
HILDQPVGPS KASLPKLCCP GTKDSELSEE NDFYDDFNMD EVDLNFENYE ELFGVSLSHS  240
EELFENGGID SLFGMKEMSA AEGSSVGHFN STQPACSNAA SADSIVSTKT EPILCFTARQ  300
GQSNLSFSGL TGESSPGDYQ DCGASSMLLM GEPPWCPPCP ENSFQSANRS DAVMRYKEKK  360
KTRKFEKRVR YASRKARADV RKRVKGRFVK AGENYDYDPL SQTRSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916920.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_023916921.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_023916922.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_023916923.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-156COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2I4FNT90.0A0A2I4FNT9_JUGRE; zinc finger protein CONSTANS-LIKE 9-like
STRINGEOX935730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-129CONSTANS-like 9