PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold12134-augustus-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HSF
Protein Properties Length: 275aa    MW: 32044.2 Da    PI: 7.4996
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold12134-augustus-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35251162102
                                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE-- CS
                                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvk 66 
                                                   Fl k+y++++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+ 
  maker-scaffold12134-augustus-gene-0.3-mRNA-1  25 FLIKTYQLVDDHRTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKIV 89 
                                                   9**************************************************************** PP

                                                   -SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                                  HSF_DNA-bind  67 deekkskskekiweFkhksFkkgkkellekikrkks 102
                                                   +++         weF++++F+kg k+ll++i+r+k+
  maker-scaffold12134-augustus-gene-0.3-mRNA-1  90 SDR---------WEFANEYFRKGAKHLLSEIHRRKT 116
                                                   999.........**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3716108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5621114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.58E-3322114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.8E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-182548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-187688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAFTMERCEE MVFSVESQKT VPAPFLIKTY QLVDDHRTDH IVSWGEDETT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFKKIVS DRWEFANEYF RKGAKHLLSE IHRRKTPQHH  120
HQQYYHDQPH QFFQPDDNAA WFDSPLPSPK PNTDILTALT EDNQRLRRKN FMLLSELAHM  180
KNLYNDIIYF IQNHVKPVPF DQRNTHAIPK LIELDSLCEA QNVAGVHGAK GCNLGNKSLV  240
TSTEDTNSTV KLFGVPLSGK KRLHSEELKF GVSDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A4e-20211144106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A4e-20211144106HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023901122.10.0heat stress transcription factor B-4b-like
SwissprotQ7XHZ02e-85HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A2N9FXJ31e-168A0A2N9FXJ3_FAGSY; Uncharacterized protein
STRINGGLYMA20G08250.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-83heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]