PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold12041-augustus-gene-0.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 261aa    MW: 29657.3 Da    PI: 5.1065
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold12041-augustus-gene-0.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-3053111259
                                                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                                    +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+
  maker-scaffold12041-augustus-gene-0.11-mRNA-1  53 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCRNDASMLIITYTSSHNHP 111
                                                    699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-3243113IPR003657WRKY domain
SuperFamilySSF1182902.09E-2649113IPR003657WRKY domain
SMARTSM007745.2E-3652112IPR003657WRKY domain
PROSITE profilePS5081130.99753113IPR003657WRKY domain
PfamPF031062.2E-2554111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVDSLLPKLD KEVSKELKPE IQASKRRKMA QKTVVTVRIG VNVGKLKNEG PPSDFWSWRK  60
YGQKPIKGSP YPRGYYRCST SKGCSAKKQV ERCRNDASML IITYTSSHNH PGPDLSTTNL  120
IQLAEEPKTH STVNLQTPLK EEQQELAQEE EKQNEPTMTT KEKEPGEDHF HYIQSPISSS  180
QDIIVNHGED PFTVNLEKPH ETMGLVLDEE PLCYSQLMNF STPMSEENDF FDELEELPTS  240
SSFTSFMTSN FSEERIPVVP S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-21531131779Disease resistance protein RRS1
5w3x_D3e-21531131779Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873175.11e-166probable WRKY transcription factor 69
TrEMBLA0A2I4ERV11e-143A0A2I4ERV1_JUGRE; probable WRKY transcription factor 69 isoform X1
STRINGEMJ025641e-114(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.17e-35WRKY DNA-binding protein 35