PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold11640-augustus-gene-0.5-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | CAMTA | ||||||||
Protein Properties | Length: 96aa MW: 11111.1 Da PI: 9.988 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 60.2 | 4e-19 | 26 | 72 | 29 | 74 |
CG-1 29 elktrpksgsliLynrkkvryfrkDGysw.kkkkdgktvrEdhekLK 74 ++ + +sgs+ L+nrk +r frkDGy+w kkk+dgktv E hekLK maker-scaffold11640-augustus-gene-0.5-mRNA-1 26 HPVVELRSGSFCLFNRKELRCFRKDGYNWtKKKRDGKTVMEGHEKLK 72 5567789**********************55678************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01076 | 2.4E-4 | 1 | 87 | IPR005559 | CG-1 DNA-binding domain |
PROSITE profile | PS51437 | 18.169 | 1 | 96 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 7.3E-13 | 26 | 72 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MATAACGVNT LCIIKSIIVL MACAEHPVVE LRSGSFCLFN RKELRCFRKD GYNWTKKKRD 60 GKTVMEGHEK LKGVTFVKRF FVLHNYLCRE NFTSFQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023901441.1 | 2e-17 | calmodulin-binding transcription activator 3-like isoform X1 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 8e-15 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |