PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold11554-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family M-type_MADS
Protein Properties Length: 352aa    MW: 39263.8 Da    PI: 10.3328
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold11554-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.93.1e-191559145
                                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                                  k+ien+  r +tfskRr gi KKA+EL +LC+aev v+ifs+ gk
  maker-scaffold11554-augustus-gene-0.5-mRNA-1 15 KKIENEDDRLITFSKRRSGIYKKASELVTLCGAEVGVVIFSPAGK 59
                                                  68*****************************************98 PP
2SRF-TF67.71.1e-21211254245
                                                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                                        SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                                                    ++++s rqvtfskRr+g++KKA+EL +LC+aeva+++fs+ gk
  maker-scaffold11554-augustus-gene-0.5-mRNA-1 211 MVKDNSSRQVTFSKRRTGLFKKANELATLCGAEVAIVVFSPGGK 254
                                                   67899************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.231767IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-29766IPR002100Transcription factor, MADS-box
CDDcd002651.32E-31879No hitNo description
SuperFamilySSF554551.57E-26881IPR002100Transcription factor, MADS-box
PfamPF003192.3E-231663IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.46E-28202273IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.787202262IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-35202261IPR002100Transcription factor, MADS-box
CDDcd002652.47E-31203272No hitNo description
PRINTSPR004044.7E-20204224IPR002100Transcription factor, MADS-box
PfamPF003192.5E-25212258IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-20224239IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-20239260IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEGKKTKGRQ KIEMKKIENE DDRLITFSKR RSGIYKKASE LVTLCGAEVG VVIFSPAGKP  60
FSFGHPSVES VANRFLRQNP PPGQGDSTHP LVEAHRRVRI NELNQHYNEL LSLLEAEKEQ  120
GKALQKLTKA RGNRGWWEVP TEELGYQELK QMNAQLEELH KNLCDHMKEK AFAGGALPSS  180
SNYFPGNSSQ GSMPFNPNAR IMGRRKIEMK MVKDNSSRQV TFSKRRTGLF KKANELATLC  240
GAEVAIVVFS PGGKPFSFGH PTVDSVSDRF LNQDQEVPNV KARAGSSKNA KVDRLNQQLV  300
DVMKRLQAEK KKAQSLDQKA KKAKASQTCQ TQINELSLHE LEKFEGIDGG AS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919070.11e-139agamous-like MADS-box protein AGL62
TrEMBLA0A498JYA21e-120A0A498JYA2_MALDO; Uncharacterized protein
STRINGPOPTR_0004s13590.16e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-49AGAMOUS-like 62