PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold11347-snap-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HRT-like
Protein Properties Length: 614aa    MW: 67612.3 Da    PI: 9.4817
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold11347-snap-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like59.65.1e-19270299231
                                   HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                                                CGv l+dGsvCkr+Pv+ RKRC+eHKGmRi
  maker-scaffold11347-snap-gene-0.12-mRNA-1 270 CGVPLGDGSVCKRPPVERRKRCAEHKGMRI 299
                                                *****************************7 PP
2HRT-like581.6e-18359389131
                                   HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                                                iCGv l++Gs+C rqP++gRKRC  HKGmRi
  maker-scaffold11347-snap-gene-0.12-mRNA-1 359 ICGVPLNNGSPCLRQPAEGRKRCDDHKGMRI 389
                                                8*****************************7 PP
3HRT-like42.98.2e-14451480130
                                   HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                                                iCG+ l+ G  C+rqP++gR RCeeHK  +
  maker-scaffold11347-snap-gene-0.12-mRNA-1 451 ICGLDLGSGAYCTRQPARGRVRCEEHKSLK 480
                                                8**************************876 PP
4HRT-like39.97.1e-13516545130
                                   HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                                                +CG++  +Gs C+r+Pv+g+KRC++H GmR
  maker-scaffold11347-snap-gene-0.12-mRNA-1 516 TCGATCCNGSLCRRKPVEGNKRCWQHEGMR 545
                                                7****************************9 PP
5HRT-like46.37e-15578607130
                                   HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                                                +CG++ ++Gs C+rqP++g+KRC++HKG+R
  maker-scaffold11347-snap-gene-0.12-mRNA-1 578 TCGATCNNGSLCRRQPAEGNKRCWQHKGKR 607
                                                7****************************9 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MVAAAALASS DSFTTRLKRE DCNRTKHDSV LVGPSDWEDY ALGKEGAARY RVHNLPNSSG  60
SGIYELGIAV SQTGLGREVG KLDPDRLVVV YLGQADNVRT RLQQYGRTGA HLGNSYANGC  120
ANDSKNVSLQ KQLGLFDEIL SRGYPIVFRW APMESKRNAE KTEAQLLNRF DYAWNTSLNG  180
ARRPGDILQK LHKIASGTTR YPIIVRKLLP FSHKQVGIRI KASKLPSPEN KLNTYEESYN  240
FLSRVFKFGR SQPRLVLDRI GVIEDTTSFC GVPLGDGSVC KRPPVERRKR CAEHKGMRIN  300
MSIPKVVTEG NPKSVVGSDF STIGYRKSGS DSAQNFSYGT IQLQPVPVKC PVSESFTPIC  360
GVPLNNGSPC LRQPAEGRKR CDDHKGMRIC RSISESVTEG KSQYDRDADL DSSCHDALSC  420
NQNSSVMCKP GIVQPRVSLE KIDVSKGYET ICGLDLGSGA YCTRQPARGR VRCEEHKSLK  480
VNGLVSKLEA EDKSHVSGSG SKLSAYNDYK YGNSTTCGAT CCNGSLCRRK PVEGNKRCWQ  540
HEGMRAGSSF FGFDSRINSL TCSNLSTYND YKYGNSTTCG ATCNNGSLCR RQPAEGNKRC  600
WQHKGKRGGS SFYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023906612.10.0protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A2N9G5B50.0A0A2N9G5B5_FAGSY; Uncharacterized protein
STRINGVIT_11s0016g02440.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.16e-94effector of transcription2