PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold11208-augustus-gene-0.10-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | HB-other | ||||||||
Protein Properties | Length: 157aa MW: 18046.2 Da PI: 4.361 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 15.9 | 2.3e-05 | 90 | 115 | 26 | 51 |
-HHHHHHHHHHCTS-HHHHHHHHHHH CS Homeobox 26 saeereeLAkklgLterqVkvWFqNr 51 +++++ LA+ +gL+++q+ +WF N+ maker-scaffold11208-augustus-gene-0.10-mRNA-1 90 DESQKLALAEPTGLDQKQINNWFINQ 115 6788999****************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.24E-7 | 90 | 136 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-12 | 90 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.35E-4 | 90 | 123 | No hit | No description |
Pfam | PF05920 | 7.0E-7 | 91 | 115 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 97 | 120 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
CDRNVSSEEE VDVNTNLIDP QAEDRELKRS AFAQVQWIFR QSEAGIHEEK EERETAYRSQ 60 ATVAGLVEQA LQMTLPFGIY NTTTLLIPID ESQKLALAEP TGLDQKQINN WFINQIKRHW 120 KPSEDMQFVV MDATHPHYYV DNVLGNPFPM DISPTLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM479246 | 1e-59 | AM479246.2 Vitis vinifera contig VV78X069130.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023881608.1 | 1e-51 | homeobox protein SBH1-like | ||||
Swissprot | O22299 | 6e-46 | LET6_SOLLC; Homeobox protein knotted-1-like LET6 | ||||
TrEMBL | A0A2N9H8S9 | 1e-49 | A0A2N9H8S9_FAGSY; Uncharacterized protein | ||||
STRING | evm.model.supercontig_152.56 | 2e-51 | (Carica papaya) | ||||
STRING | POPTR_0011s01590.1 | 2e-51 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2039 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 5e-44 | KNOX/ELK homeobox transcription factor |