PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold11030-augustus-gene-0.7-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

CAMTA

Protein Properties

Length: 881aa MW: 100072 Da PI: 4.2375

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold11030-augustus-gene-0.7-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	95.7	4e-30	10	91	2	83
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrE 68 ++ ++rwl++ ei++iL n++++ ++ e+ + p++gsl+L++rk++ryfr+DG++w+k kdgktv+E maker-scaffold11030-augustus-gene-0.7-mRNA-1 10 IEAQSRWLRPAEICEILRNYKNYCISPEPVNMPQNGSLFLFDRKVLRYFRNDGHNWRKSKDGKTVKE 76 56699************************************************************ PP CG-1 69 dhekLKvggvevlyc 83 he+LK +++c maker-scaffold11030-augustus-gene-0.7-mRNA-1 77 GHERLKDSLCFLINC 91 ****766333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	42.24	5	133	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.6E-34	8	212	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.4E-26	11	91	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 881 aa Download sequence Send to blast
WNADIEQVLI EAQSRWLRPA EICEILRNYK NYCISPEPVN MPQNGSLFLF DRKVLRYFRN 60 DGHNWRKSKD GKTVKEGHER LKDSLCFLIN CVEKFVLPFR LEALMCCTAT MPMEKTMKIF 120 KDAVIGYSKR GQRRGYEREE EEKRGIPPYN NLVCGGGGGL HICEGIASNV EKELDNVNLY 180 FVSRGFSYVA YLTHYYYREL SHIALVHYRE VKGNRTNFNC IKGTEEAVPY YQETELNPIS 240 DKADDNNNAG LKILDFPSWE DDLGNGTSGN QALTFQPSFP ETQPDTNGVL PEQENPILWE 300 LLNSYMDETL EFGHQPQIQK ECQGNRANFN CINETEEAVP YYRETEPNPI SDDYQGNLPT 360 ISGVDLASLT EADKAEDSNS AGLKILDFPS WEDDLGNGTS RNQAVTFQPS FPETQPDTNG 420 VLPEQENPIP GDLFNSNFDE TLEFGNQPQI QKECQGNRTN FNCINETEEA VPYYRETEPN 480 PISDDYQGNL PTISGVDLAS LTEADKAEDS NSAGLKILDF PSWEDYLGNG TSGNQAVTFQ 540 PSFSETQPDT NGVFLEQENP ILGDLFNSNF DETWEFGNQP QIQKNSEGEW PLDQNMHAES 600 VYGVNSRFNE QDGEWVKLLN SREPFLPKTD KQDNDPMQSN LQVQLSDADH GYYLKSNPEI 660 NMALEGKTNS SFTIKKTGLD GSLREENLKK LDSFNRWMSK ELGDVNESHM QSSSEVYWDT 720 VESENRADES NISPQVHLDN YTLGPSLSQD QLFSIIDFSP NWAYXXXXXX XXXGLRSPDY 780 WKVLEESTRN RKLHVVLVAC SEVREFEYRV SLIKDVDIMD TSSNTNDNLL MQFKKNLSLT 840 SAGALSTDSV IGREKSQVSS KISSLLEGDN DEWDQMLKAC F

Sequence ? help Back to Top

Protein Sequence Length: 881 aa Download sequence Send to blast

WNADIEQVLI EAQSRWLRPA EICEILRNYK NYCISPEPVN MPQNGSLFLF DRKVLRYFRN  60
DGHNWRKSKD GKTVKEGHER LKDSLCFLIN CVEKFVLPFR LEALMCCTAT MPMEKTMKIF  120
KDAVIGYSKR GQRRGYEREE EEKRGIPPYN NLVCGGGGGL HICEGIASNV EKELDNVNLY  180
FVSRGFSYVA YLTHYYYREL SHIALVHYRE VKGNRTNFNC IKGTEEAVPY YQETELNPIS  240
DKADDNNNAG LKILDFPSWE DDLGNGTSGN QALTFQPSFP ETQPDTNGVL PEQENPILWE  300
LLNSYMDETL EFGHQPQIQK ECQGNRANFN CINETEEAVP YYRETEPNPI SDDYQGNLPT  360
ISGVDLASLT EADKAEDSNS AGLKILDFPS WEDDLGNGTS RNQAVTFQPS FPETQPDTNG  420
VLPEQENPIP GDLFNSNFDE TLEFGNQPQI QKECQGNRTN FNCINETEEA VPYYRETEPN  480
PISDDYQGNL PTISGVDLAS LTEADKAEDS NSAGLKILDF PSWEDYLGNG TSGNQAVTFQ  540
PSFSETQPDT NGVFLEQENP ILGDLFNSNF DETWEFGNQP QIQKNSEGEW PLDQNMHAES  600
VYGVNSRFNE QDGEWVKLLN SREPFLPKTD KQDNDPMQSN LQVQLSDADH GYYLKSNPEI  660
NMALEGKTNS SFTIKKTGLD GSLREENLKK LDSFNRWMSK ELGDVNESHM QSSSEVYWDT  720
VESENRADES NISPQVHLDN YTLGPSLSQD QLFSIIDFSP NWAYXXXXXX XXXGLRSPDY  780
WKVLEESTRN RKLHVVLVAC SEVREFEYRV SLIKDVDIMD TSSNTNDNLL MQFKKNLSLT  840
SAGALSTDSV IGREKSQVSS KISSLLEGDN DEWDQMLKAC F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023901383.1	0.0	calmodulin-binding transcription activator 3-like
TrEMBL	A0A2N9IUD1	1e-162	A0A2N9IUD1_FAGSY; Uncharacterized protein
STRING	VIT_07s0141g00250.t01	1e-101	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	3e-34	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains