PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold10979-augustus-gene-0.4-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | HSF | ||||||||
Protein Properties | Length: 365aa MW: 41899 Da PI: 5.1322 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115 | 4.9e-36 | 44 | 135 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE-- CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvk 66 Fl+k+y+i+ed+++++++sws+ +nsfvv+d++ fa +Lp+yFkh+nf+SFvRQLn+YgF+kv+ maker-scaffold10979-augustus-gene-0.4-mRNA-1 44 FLTKTYDIVEDSTTNHVVSWSRGNNSFVVWDPQAFAMILLPRYFKHNNFSSFVRQLNTYGFRKVD 108 9**************************************************************** PP -SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 67 deekkskskekiweFkhksFkkgkkellekikrkks 102 ++ weF+++ F +g+k+ll++i+r+k+ maker-scaffold10979-augustus-gene-0.4-mRNA-1 109 PDR---------WEFANEGFLRGQKHLLKNIRRRKT 135 999.........**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.18E-36 | 40 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 8.6E-39 | 40 | 133 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.3E-61 | 40 | 133 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-19 | 44 | 67 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.6E-31 | 44 | 133 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-19 | 82 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 83 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.4E-19 | 95 | 107 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MNPQGRVKVA FRGASSSFSG TPSSSMVQPP QPLEGIRETG PPPFLTKTYD IVEDSTTNHV 60 VSWSRGNNSF VVWDPQAFAM ILLPRYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL 120 RGQKHLLKNI RRRKTIQLQA SQQALDSCVE VGRFGLDGEV DRLKRDKHVL MVELVKLRQQ 180 QQNTRAYIQS MEDRLRKTEG KQQQMMNFLA RAMQNPNFLQ ELVQQKERRK ELQEAITKKR 240 RRPIDQGPSD LEIGVLGQGG EGNFVKVEPY DFGDMSEFEA SELDRLAMDM HGLSGSQNNP 300 EEEHIEKGVE HESRDMIKDL DEGFWESLFN EGIEEEIGLM GIDQEDDEDV DVLAEHMGYL 360 ASSPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-25 | 42 | 135 | 27 | 131 | Heat shock factor protein 1 |
5d5v_B | 6e-25 | 42 | 135 | 27 | 131 | Heat shock factor protein 1 |
5d5v_D | 6e-25 | 42 | 135 | 27 | 131 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 227 | 241 | RRKELQEAITKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023904745.1 | 0.0 | heat stress transcription factor A-6b-like isoform X1 | ||||
Swissprot | Q9LUH8 | 1e-142 | HFA6B_ARATH; Heat stress transcription factor A-6b | ||||
TrEMBL | A0A2N9F5B2 | 0.0 | A0A2N9F5B2_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_029306m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1100 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-139 | heat shock transcription factor A6B |