PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold10716-augustus-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CO-like
Protein Properties Length: 379aa    MW: 41967.8 Da    PI: 5.6225
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold10716-augustus-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.32e-052060438
                                      zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                                                  r+C+++ +   + +C+ ++ +lC  C   +H        H+
  maker-scaffold10716-augustus-gene-0.6-mRNA-1 20 RICDTCRSAACTVYCRADSAYLCTGCDARIHAAncvasrHE 60
                                                  79******99*********************6566666666 PP
2zf-B_box29.71.3e-0962107342
                                      zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                                                    ++C+ +e+ ++ + C+ +   lC  C   +H+       H++vp+
  maker-scaffold10716-augustus-gene-0.6-mRNA-1  62 VWVCEACERAPAAFVCKADAASLCTACDADIHSAnplarrHQRVPI 107
                                                   689*****************************66899999**9997 PP
3CCT69.77.5e-24310352143
                                           CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                                                   Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k+
  maker-scaffold10716-augustus-gene-0.6-mRNA-1 310 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKR 352
                                                   9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-61764IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0821764IPR000315B-box-type zinc finger
CDDcd000213.34E-72064No hitNo description
PROSITE profilePS5011911.12160107IPR000315B-box-type zinc finger
PfamPF006431.3E-761107IPR000315B-box-type zinc finger
CDDcd000211.60E-863107No hitNo description
SMARTSM003361.0E-1065107IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648310352IPR010402CCT domain
PfamPF062038.0E-18310352IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MLKLESNDGG STGGDNNWAR ICDTCRSAAC TVYCRADSAY LCTGCDARIH AANCVASRHE  60
RVWVCEACER APAAFVCKAD AASLCTACDA DIHSANPLAR RHQRVPILPI SGKLHGPHVV  120
GAMSDTKERF VDQDGDEMID EEDEDEAASW LLLNPVKGSN NNNNNNNQNN GFLFAGEVDE  180
YLDLVEYNSC AENQFNDQYS QQQQQHYCVP QKSYGGDSVV PVQCGEAKGQ LQLHQQNFQL  240
GLDYESSKAA YSYNGSISHS VSVSSMDVGV VPESTMSDIS ISHSRPPKGT IDLFSGSTIQ  300
IPAQLTPLDR EARVLRYREK KKTRKFEKTI RYASRKAYAE TRPRIKGRFA KRMDVEVEVD  360
QMFSTTLMAE TVYGIVPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904681.10.0zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-154COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2N9H5I20.0A0A2N9H5I2_FAGSY; Uncharacterized protein
STRINGPOPTR_0017s14410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-119CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]