PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold10692-snap-gene-0.12-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 162aa MW: 19109.6 Da PI: 9.5723 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131 | 8.7e-41 | 9 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdk 66 lp+G+rF+P+d el+ yLkkk++g++ ++ +i+ ++ y+ +PwdLp k +++e++ew+fF++++ maker-scaffold10692-snap-gene-0.12-mRNA-1 9 LPRGVRFSPKDPELIELYLKKKITGNDEDT-WFIPGIEFYEDDPWDLPiKsGIATEDQEWFFFTEQSP 75 799************************888.78**************96347777999********** PP NAM 67 kyatgkrknra...........tksgyWkatgkdkevlskkgelvglkktLvfy...kgrapkgektd 120 k++++++k+r+ tk+g+Wk+tg+d+e++s +++l+g+kktLvfy +++++k+ +t+ maker-scaffold10692-snap-gene-0.12-mRNA-1 76 KHQKDTQKKRKrgqnqelvdrqTKAGFWKSTGRDREIKS-GESLTGMKKTLVFYtgsNKKEEKAIRTN 142 ***99999998899*************************.999***********444446677779** PP NAM 121 Wvmheyrl 128 Wvmheyr maker-scaffold10692-snap-gene-0.12-mRNA-1 143 WVMHEYRT 150 ******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-40 | 7 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.23 | 9 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.3E-24 | 10 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MEKLILGHLP RGVRFSPKDP ELIELYLKKK ITGNDEDTWF IPGIEFYEDD PWDLPIKSGI 60 ATEDQEWFFF TEQSPKHQKD TQKKRKRGQN QELVDRQTKA GFWKSTGRDR EIKSGESLTG 120 MKKTLVFYTG SNKKEEKAIR TNWVMHEYRT TQKEFDGKHP GQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-25 | 8 | 149 | 14 | 139 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 85 | QKDTQKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023913083.1 | 1e-99 | NAC domain-containing protein 14-like isoform X3 | ||||
TrEMBL | A0A2N9EGM8 | 1e-44 | A0A2N9EGM8_FAGSY; Uncharacterized protein | ||||
STRING | GLYMA02G38710.1 | 2e-42 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 5e-42 | NAC transcription factor-like 9 |