PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold09526-snap-gene-0.7-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | SRS | ||||||||
Protein Properties | Length: 103aa MW: 11100.4 Da PI: 9.1615 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 69.4 | 1.2e-21 | 11 | 63 | 102 | 154 |
DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++s P +v+++avfrc rv++++dg +e+ Yq++vsi+Ghvf+G+LydqG +e maker-scaffold09526-snap-gene-0.7-mRNA-1 11 KKSSPGQVRAPAVFRCHRVTTISDGAAEFVYQATVSISGHVFRGYLYDQGFDE 63 3558**********************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.7E-19 | 10 | 62 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 2.7E-24 | 15 | 60 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MRDEITDASF KKSSPGQVRA PAVFRCHRVT TISDGAAEFV YQATVSISGH VFRGYLYDQG 60 FDEKNAFPSI SQLHLVSSGS GRKRDASSSP IVAPSNTHLA PVS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018849430.1 | 2e-40 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 | ||||
Refseq | XP_018849431.1 | 2e-40 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 | ||||
Refseq | XP_018849432.1 | 2e-40 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 | ||||
Swissprot | Q94CK9 | 1e-25 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A2N9G8K1 | 2e-47 | A0A2N9G8K1_FAGSY; Uncharacterized protein | ||||
STRING | XP_010067729.1 | 1e-35 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5704 | 31 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 4e-28 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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