PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09484-snap-gene-0.17-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 160aa    MW: 18317.9 Da    PI: 10.3958
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09484-snap-gene-0.17-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.61.3e-49101381127
                                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdk 66 
                                                +p+GfrFhPtdeelv++yL+ k+eg++ ++ +vi+ev+++k+eP+dLpk   +k++++ew+fFs+rd 
  maker-scaffold09484-snap-gene-0.17-mRNA-1  10 MPVGFRFHPTDEELVSHYLRLKMEGSDSQV-HVIPEVNVCKWEPSDLPKfsVIKSDDQEWFFFSPRDF 76 
                                                799************************999.99***************5458889999********** PP

                                        NAM  67 kyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                                                k+++++r+nratksgyWk tgkd+++++k +++++g+kktLvf++gr ++g++t+Wvmhey+
  maker-scaffold09484-snap-gene-0.17-mRNA-1  77 KSSNSNRTNRATKSGYWKVTGKDRKIKAKgTNNVIGTKKTLVFHRGRVRDGVRTSWVMHEYQ 138
                                                ****************************977778***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-524144IPR003441NAC domain
PROSITE profilePS5100547.1810160IPR003441NAC domain
PfamPF023659.2E-2911138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MTSIKGMESM PVGFRFHPTD EELVSHYLRL KMEGSDSQVH VIPEVNVCKW EPSDLPKFSV  60
IKSDDQEWFF FSPRDFKSSN SNRTNRATKS GYWKVTGKDR KIKAKGTNNV IGTKKTLVFH  120
RGRVRDGVRT SWVMHEYQPT VTLPHQVGGV HVNALNLVQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-39913814139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885011.11e-105protein NTM1-like 9
RefseqXP_023894735.11e-105protein NTM1-like 9
SwissprotF4JN359e-62NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A2N9H8V12e-78A0A2N9H8V1_FAGSY; Uncharacterized protein
STRINGPOPTR_0011s15230.13e-60(Populus trichocarpa)
STRINGcassava4.1_032341m7e-61(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.14e-64NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]