PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold09076-augustus-gene-0.11-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 148aa MW: 16596.5 Da PI: 6.1642 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 51.4 | 2.6e-16 | 12 | 105 | 5 | 95 |
NF-YB 5 drflPianvsrimkkvlPana...kiskdaketvqecvsefisfvtseasdkcqrekrktingd 65 ++lP + v r++k+ l ++ + kda e + fi ++++ a+d c++ kr+tin+d maker-scaffold09076-augustus-gene-0.11-mRNA-1 12 AEELPRTIVRRVVKEKLSHDGddmSVHKDALLAFSESARIFIHYLSATANDICKESKRQTINAD 75 56799999*********9887333589999999******************************* PP NF-YB 66 dllwalatlGfedyveplkvylkkyreleg 95 d+l al ++ f +++ plk+ l+++r+ ++ maker-scaffold09076-augustus-gene-0.11-mRNA-1 76 DVLTALQEIEFSHFLGPLKASLHEFRQKNA 105 **************************9765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.9E-35 | 5 | 143 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-11 | 14 | 81 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 2.0E-26 | 15 | 125 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 148 aa Download sequence Send to blast |
MESENQKVIS EAEELPRTIV RRVVKEKLSH DGDDMSVHKD ALLAFSESAR IFIHYLSATA 60 NDICKESKRQ TINADDVLTA LQEIEFSHFL GPLKASLHEF RQKNAGKKAG AAKEKEEKKK 120 RKLEELSHDN GGGERVENED NQDGTGHA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 112 | 121 | KEKEEKKKRK |
2 | 117 | 122 | KKKRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023915521.1 | 9e-83 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A2N9ISH8 | 5e-62 | A0A2N9ISH8_FAGSY; Uncharacterized protein | ||||
STRING | Gorai.009G085200.1 | 2e-59 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11863 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G27470.1 | 6e-39 | nuclear factor Y, subunit B11 |