PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold09020-snap-gene-0.7-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

ERF

Protein Properties

Length: 390aa MW: 43179.1 Da PI: 6.3998

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold09020-snap-gene-0.7-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.4	3.6e-18	60	110	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+e+r+p +k+ r++lg+f tae+Aa+a++ a+ +l+g maker-scaffold09020-snap-gene-0.7-mRNA-1 60 PVYRGVRRRN-SGKWVSEVREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 110 68***888.8**9998...347***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.5E-13	60	110	IPR001471	AP2/ERF domain
SMART	SM00380	3.0E-32	61	124	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.8E-32	61	120	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.669	61	118	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.17E-21	61	120	IPR016177	DNA-binding domain
CDD	cd00018	1.94E-30	62	120	No hit	No description
PRINTS	PR00367	7.4E-9	62	73	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.4E-9	84	100	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	9.769	207	272	IPR001471	AP2/ERF domain
SMART	SM00380	0.01	233	278	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-9	240	274	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.94E-6	241	274	IPR016177	DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MDIFMHFSDP QYLVGSDIWS SESESGSTRT VNLSDEEVML ASRNPKKRAG RKKFKETRHP 60 VYRGVRRRNS GKWVSEVREP NKKSRIWLGT FPTAEMAARA HDVAAIALRG KSACLNFADS 120 AWRLPVPASA EAKDIQRTAA EAAEAFRPAE SNVVSEDETR PMRKNAVSPA TTGVEADGVF 180 FMDDEAVFGM PGLLTNMAEG MLLPPPHYYG EDDMETNIDL SNEEVMLASK NPKKRAGRKK 240 FKETFPMAEM AARAHDVAAI ALRGRFACLN FADSVWRLPM PASAEAKDIQ RAAAEAAEMF 300 RPTELDKVSG DELRPMGKNA VSIATIVEAT KTEAKGVFFI DEEAVFGMAR LLANIKEVNI 360 VLEAVSIWPP VRYISNTGQY QYTVSDFSIN

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MDIFMHFSDP QYLVGSDIWS SESESGSTRT VNLSDEEVML ASRNPKKRAG RKKFKETRHP  60
VYRGVRRRNS GKWVSEVREP NKKSRIWLGT FPTAEMAARA HDVAAIALRG KSACLNFADS  120
AWRLPVPASA EAKDIQRTAA EAAEAFRPAE SNVVSEDETR PMRKNAVSPA TTGVEADGVF  180
FMDDEAVFGM PGLLTNMAEG MLLPPPHYYG EDDMETNIDL SNEEVMLASK NPKKRAGRKK  240
FKETFPMAEM AARAHDVAAI ALRGRFACLN FADSVWRLPM PASAEAKDIQ RAAAEAAEMF  300
RPTELDKVSG DELRPMGKNA VSIATIVEAT KTEAKGVFFI DEEAVFGMAR LLANIKEVNI  360
VLEAVSIWPP VRYISNTGQY QYTVSDFSIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-14	59	117	12	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269\|PubMed:11798174, ECO:0000269\|PubMed:16244146}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00454	DAP	Transfer from AT4G25490	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold stress (PubMed:9735350). Subject to degradation by the 26S proteasome pathway in freezing conditions (PubMed:28344081). {ECO:0000269\|PubMed:28344081, ECO:0000269\|PubMed:9735350}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023916189.1	1e-142	dehydration-responsive element-binding protein 1B-like
Refseq	XP_023916190.1	1e-142	dehydration-responsive element-binding protein 1B-like
Refseq	XP_023916191.1	1e-142	dehydration-responsive element-binding protein 1B-like
Refseq	XP_023916192.1	1e-142	dehydration-responsive element-binding protein 1B-like
Refseq	XP_023916193.1	1e-142	dehydration-responsive element-binding protein 1B-like
Refseq	XP_023916194.1	1e-142	dehydration-responsive element-binding protein 1B-like
Refseq	XP_023916195.1	1e-142	dehydration-responsive element-binding protein 1B-like
Refseq	XP_023916196.1	1e-142	dehydration-responsive element-binding protein 1B-like
Refseq	XP_023916197.1	1e-142	dehydration-responsive element-binding protein 1B-like
Refseq	XP_023916199.1	1e-142	dehydration-responsive element-binding protein 1B-like
Swissprot	P93835	6e-73	DRE1B_ARATH; Dehydration-responsive element-binding protein 1B
TrEMBL	A0A3Q7FF31	1e-116	A0A3Q7FF31_SOLLC; Uncharacterized protein
STRING	POPTR_0012s13870.1	2e-96	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF243	33	224

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25490.1	1e-74	C-repeat/DRE binding factor 1

Publications ? help Back to Top
Keily J, et al. Model selection reveals control of cold signalling by evening-phased components of the plant circadian clock. Plant J., 2013. 76(2): p. 247-57 [PMID:23909712] Shi H, et al. The Cysteine2/Histidine2-Type Transcription Factor ZINC FINGER OF ARABIDOPSIS THALIANA6 Modulates Biotic and Abiotic Stress Responses by Activating Salicylic Acid-Related Genes and C-REPEAT-BINDING FACTOR Genes in Arabidopsis. Plant Physiol., 2014. 165(3): p. 1367-1379 [PMID:24834923] Xu F, et al. Increased drought tolerance through the suppression of ESKMO1 gene and overexpression of CBF-related genes in Arabidopsis. PLoS ONE, 2014. 9(9): p. e106509 [PMID:25184213] Bello B, et al. Cloning of Gossypium hirsutum sucrose non-fermenting 1-related protein kinase 2 gene (GhSnRK2) and its overexpression in transgenic Arabidopsis escalates drought and low temperature tolerance. PLoS ONE, 2014. 9(11): p. e112269 [PMID:25393623] Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana. Plant Cell Rep., 2015. 34(5): p. 843-52 [PMID:25627253] Jiang W,Wu J,Zhang Y,Yin L,Lu J Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses. Protoplasma, 2015. 252(5): p. 1361-74 [PMID:25643917] Park S, et al. Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network. Plant J., 2015. 82(2): p. 193-207 [PMID:25736223] Catalá R,Salinas J The Arabidopsis ethylene overproducer mutant eto1-3 displays enhanced freezing tolerance. Plant Signal Behav, 2015. 10(3): p. e989768 [PMID:25850018] Shi H,Qian Y,Tan DX,Reiter RJ,He C Melatonin induces the transcripts of CBF/DREB1s and their involvement in both abiotic and biotic stresses in Arabidopsis. J. Pineal Res., 2015. 59(3): p. 334-42 [PMID:26182834] Wang CL,Zhang SC,Qi SD,Zheng CC,Wu CA Delayed germination of Arabidopsis seeds under chilling stress by overexpressing an abiotic stress inducible GhTPS11. Gene, 2016. 575(2 Pt 1): p. 206-12 [PMID:26325072] Gehan MA, et al. Natural variation in the C-repeat binding factor cold response pathway correlates with local adaptation of Arabidopsis ecotypes. Plant J., 2015. 84(4): p. 682-93 [PMID:26369909] Su F, et al. Burkholderia phytofirmans PsJN reduces impact of freezing temperatures on photosynthesis in Arabidopsis thaliana. Front Plant Sci, 2015. 6: p. 810 [PMID:26483823] Gao S, et al. A cotton miRNA is involved in regulation of plant response to salt stress. Sci Rep, 2016. 6: p. 19736 [PMID:26813144] Shi H,Wei Y,He C Melatonin-induced CBF/DREB1s are essential for diurnal change of disease resistance and CCA1 expression in Arabidopsis. Plant Physiol. Biochem., 2016. 100: p. 150-155 [PMID:26828406] Wei T, et al. Arabidopsis DREB1B in transgenic Salvia miltiorrhiza increased tolerance to drought stress without stunting growth. Plant Physiol. Biochem., 2016. 104: p. 17-28 [PMID:27002402] Norén L, et al. Circadian and Plastid Signaling Pathways Are Integrated to Ensure Correct Expression of the CBF and COR Genes during Photoperiodic Growth. Plant Physiol., 2016. 171(2): p. 1392-406 [PMID:27208227] Zhao C, et al. Mutational Evidence for the Critical Role of CBF Transcription Factors in Cold Acclimation in Arabidopsis. Plant Physiol., 2016. 171(4): p. 2744-59 [PMID:27252305] Jia Y, et al. The cbfs triple mutants reveal the essential functions of CBFs in cold acclimation and allow the definition of CBF regulons in Arabidopsis. New Phytol., 2016. 212(2): p. 345-53 [PMID:27353960] Zhao C,Zhu JK The broad roles of CBF genes: From development to abiotic stress. Plant Signal Behav, 2016. 11(8): p. e1215794 [PMID:27472659] Li P, et al. The Arabidopsis UDP-glycosyltransferases UGT79B2 and UGT79B3, contribute to cold, salt and drought stress tolerance via modulating anthocyanin accumulation. Plant J., 2017. 89(1): p. 85-103 [PMID:27599367] Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation. Plant Cell Environ., 2017. 40(1): p. 108-120 [PMID:27723941] Shi Y, et al. The precise regulation of different COR genes by individual CBF transcription factors in Arabidopsis thaliana. J Integr Plant Biol, 2017. 59(2): p. 118-133 [PMID:28009483] Zhou M,Chen H,Wei D,Ma H,Lin J Arabidopsis CBF3 and DELLAs positively regulate each other in response to low temperature. Sci Rep, 2017. 7: p. 39819 [PMID:28051152] Li H, et al. BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. Mol Plant, 2017. 10(4): p. 545-559 [PMID:28089951] Liu Z, et al. Plasma Membrane CRPK1-Mediated Phosphorylation of 14-3-3 Proteins Induces Their Nuclear Import to Fine-Tune CBF Signaling during Cold Response. Mol. Cell, 2017. 66(1): p. 117-128.e5 [PMID:28344081] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Yang L, et al. Systematic analysis of the G-box Factor 14-3-3 gene family and functional characterization of GF14a in Brachypodium distachyon. Plant Physiol. Biochem., 2017. 117: p. 1-11 [PMID:28575641] Carlow CE, et al. Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains. Plant Physiol. Biochem., 2017. 118: p. 306-319 [PMID:28675818] Cho S, et al. Accession-Dependent CBF Gene Deletion by CRISPR/Cas System in Arabidopsis. Front Plant Sci, 2017. 8: p. 1910 [PMID:29163623] Beine-Golovchuk O, et al. Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Plant Physiol., 2018. 176(3): p. 2251-2276 [PMID:29382692] Meng LS,Xu MK,Wan W,Wang JY Integration of Environmental and Developmental (or Metabolic) Control of Seed Mass by Sugar and Ethylene Metabolisms in Arabidopsis. J. Agric. Food Chem., 2018. 66(13): p. 3477-3488 [PMID:29528636]