PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold08965-augustus-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 330aa MW: 35832.5 Da PI: 8.3887 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.3 | 4e-39 | 27 | 87 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ maker-scaffold08965-augustus-gene-0.2-mRNA-1 27 QQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 87 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.8E-33 | 29 | 85 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-28 | 30 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.46 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MLSKSNCEKM VVITPTTNEW PQQQQQQQQA LRCPRCDSSN TKFCYYNNYS LSQPRHFCKA 60 CKRYWTRGGT LRNVPVGGGC RKNKRVKRPS SASAIDGASS STTPSANTIP PSQPHLDISS 120 STSNHHLNPL FFGLSSNPSD VSLPFPTRFN SRVSNVETVS GYDLQPQLNA LGLGFSSGIL 180 ANDASENDYR NGFNPSSTSN SLLSNYSIFG SSSSTATTSP TIASLLSSNF QQQKLMNGAM 240 KDNRAPNHYQ SLAPFEGLHI ASNSAEAAGI GIKEVKVEDG NSRLDWNNGS CQNNHMEQVG 300 LSDPSLYWNA TNMGAWNDPG NIESSVTSLI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023922037.1 | 0.0 | dof zinc finger protein DOF1.4-like | ||||
TrEMBL | A0A2N9ENH8 | 1e-177 | A0A2N9ENH8_FAGSY; Uncharacterized protein | ||||
STRING | EOY28202 | 1e-142 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4522 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28310.1 | 4e-46 | Dof family protein |