PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold08760-augustus-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HSF
Protein Properties Length: 362aa    MW: 41035.4 Da    PI: 5.0916
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold08760-augustus-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.81.1e-35421332102
                                                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE- CS
                                   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkv 65 
                                                    Fl+k++++++d+++++++sw++ g+sfvv+++++f++++Lpk+Fkh+nf+SFvRQLn+YgF+k+
  maker-scaffold08760-augustus-gene-0.10-mRNA-1  42 FLTKTFDMVDDPTTNHIVSWNRGGTSFVVWEPHSFSTNLLPKHFKHNNFSSFVRQLNTYGFRKI 105
                                                    9*************************************************************** PP

                                                    --SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                                   HSF_DNA-bind  66 kdeekkskskekiweFkhksFkkgkkellekikrkks 102
                                                    + ++         weF+++ F +g+++ll++ikr+k 
  maker-scaffold08760-augustus-gene-0.10-mRNA-1 106 DPDR---------WEFANEGFLRGQRHLLRNIKRRKA 133
                                                    *999.........*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-3538131IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-3938131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6038131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.0E-3242131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MNPLYPIKDK YLGSSSSQPP RPPMMPPPQP MEGLHDTGPP PFLTKTFDMV DDPTTNHIVS  60
WNRGGTSFVV WEPHSFSTNL LPKHFKHNNF SSFVRQLNTY GFRKIDPDRW EFANEGFLRG  120
QRHLLRNIKR RKAPPQPFPP QQALGPCVEL GRFGLDGGID HLRPDKQVLV MELVKLRQQQ  180
QTTRAYLQLM EQRLQGTERK QQQMMSFLAR AMQNPTFLQQ LVQQKGKSKE LEEAMTKKRR  240
MPIDQGPSGV SGVGQSSPGG EGSNQIKLEP LEFGDYVFEV SEFEALAMEM QGFGGARKVQ  300
EEGNEELMPP ESGDKELDEG FWEELFNETF EEELRILDAE GGEDEDVNVL ADCIGCLGSS  360
PK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-244013127129Heat shock factor protein 1
5d5v_B8e-244013127129Heat shock factor protein 1
5d5v_D8e-244013127129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023912929.10.0heat stress transcription factor A-7a-like
RefseqXP_023912930.10.0heat stress transcription factor A-7a-like
RefseqXP_023912932.10.0heat stress transcription factor A-7a-like
RefseqXP_023912933.10.0heat stress transcription factor A-7a-like
SwissprotQ9LUH81e-123HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2N9G7T60.0A0A2N9G7T6_FAGSY; Uncharacterized protein
STRINGEOX946440.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-110heat shock transcription factor A6B