PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold08547-augustus-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 714aa    MW: 78318.8 Da    PI: 6.5533
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold08547-augustus-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS414.21.2e-1263457022374
                                           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalp 65 
                                                     +lLl+cAeavs++++e+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y +lp
  maker-scaffold08547-augustus-gene-0.10-mRNA-1 345 LTLLLQCAEAVSADNFEEANNMLLEISELSTPFGTAAQRVAAYFSEAMSARLVSSCLGIYGSLP 408
                                                    579************************************************************9 PP

                                           GRAS  66 psetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLl 129
                                                     s  s   s++ ++a+++f+ +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L+
  maker-scaffold08547-augustus-gene-0.10-mRNA-1 409 NSGHS--YSQKMASAFQVFNGISPLVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLF 470
                                                    99887..5999999************************************************** PP

                                           GRAS 130 qaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                                                    + LasRp+gpp +R+Tg+g     s ++le+tg+rL++fAe+lg+pfef + +a++  +l++e+
  maker-scaffold08547-augustus-gene-0.10-mRNA-1 471 HILASRPRGPPYVRLTGLGT----SMDALEATGKRLSDFAEKLGLPFEFIP-LADKPGNLDPER 529
                                                    ********************....***************************.6*********** PP

                                           GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                                                    L+v+++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf
  maker-scaffold08547-augustus-gene-0.10-mRNA-1 530 LNVSKREAVAVHWLQ--HSLYDVTGSDTN----MLWLLQRLAPKVVTVVEQDLSH-AGSFLGRF 586
                                                    **************9..999999999999....**********************.899***** PP

                                           GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                                                    +ea++yysalfdsl a++++eseer++vE++ll+rei+nv+a  g +r  + + +++Wre+l++
  maker-scaffold08547-augustus-gene-0.10-mRNA-1 587 VEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEVK-FHNWREKLQQ 649
                                                    ***********************************************888776.********** PP

                                           GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                                    +GFkp++l  +aa+qa lll +++sdgy++ e++g+l lgWkd  L+++SaWr
  maker-scaffold08547-augustus-gene-0.10-mRNA-1 650 CGFKPLSLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWR 702
                                                    ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.375318682IPR005202Transcription factor GRAS
PfamPF035144.1E-124345702IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MTACTWLDVD VNGGNNSNKN TDNNSPLTTS ASNNNNNSSR RSRCYEEQPR NHRHHQLSNG  60
KMLRKRMASE IEMEVQTSST CTAPDTIKNN DYIRFSRRAG SNTTTVNGSS SSFQVAGNNN  120
HVGSVDNFPA AAIPNPSQTI NYSTMLPSST TNMTSMTSGG GFLSCVTPPN LSPAAQPQIS  180
TTPAALIQNV REIIFPCNPN LAAVLEYRLR SLTSADPIPN YVPAAAELRR SRATVVQQQA  240
GQQTPLQLPV STSEAMNQLY LHWGVTPLPT ASPSPTVQVQ LQDEQQQQQQ ENSPPPDTAI  300
LMPPTTTTTT TTTSATTPTN IVHTSREKKE EMRQQKRDEQ GLHLLTLLLQ CAEAVSADNF  360
EEANNMLLEI SELSTPFGTA AQRVAAYFSE AMSARLVSSC LGIYGSLPNS GHSYSQKMAS  420
AFQVFNGISP LVKFSHFTAN QAIQEAFERE ERVHIIDLDI MQGLQWPGLF HILASRPRGP  480
PYVRLTGLGT SMDALEATGK RLSDFAEKLG LPFEFIPLAD KPGNLDPERL NVSKREAVAV  540
HWLQHSLYDV TGSDTNMLWL LQRLAPKVVT VVEQDLSHAG SFLGRFVEAI HYYSALFDSL  600
GASYGEESEE RHVVEQQLLS REIRNVLAVG GPSRSGEVKF HNWREKLQQC GFKPLSLAGN  660
AATQATLLLG MFPSDGYTLV EDNGTLKLGW KDLCLLTASA WRPPFPATTS THHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03287033380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919312.10.0protein SCARECROW-like
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A2N9F5I90.0A0A2N9F5I9_FAGSY; Uncharacterized protein
STRINGcassava4.1_001986m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein