PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold08356-augustus-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29620.5 Da    PI: 7.0187
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold08356-augustus-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.61.2e-26959151
                                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                                  +rien + rqvtf+kRr g++KK +ELSvLCda++ +++fss+gklyey+s
  maker-scaffold08356-augustus-gene-0.8-mRNA-1  9 SRIENRTTRQVTFAKRRVGLFKKTHELSVLCDAQIGIVVFSSSGKLYEYCS 59
                                                  59***********************************************96 PP
2K-box54.16.7e-19831671094
                                         K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 
                                                   ++ +  +++ el+++++e+ +L+ ++ ++ GedL+s ++ +L++Le++Le+s++k+R++  ell 
  maker-scaffold08356-augustus-gene-0.8-mRNA-1  83 SNDQLGQMHGELKRMQRETLSLELSLQRYTGEDLNSVQFGDLHELEEKLENSVNKVRERMFELLQ 147
                                                   5566789999******************************************************* PP

                                         K-box  75 eqieelqkkekelqeenkaL 94 
                                                   +qi++l++k k+l++en+ +
  maker-scaffold08356-augustus-gene-0.8-mRNA-1 148 QQIDNLRRKGKMLHDENEHM 167
                                                   *****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.366161IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-37160IPR002100Transcription factor, MADS-box
CDDcd002652.94E-36280No hitNo description
SuperFamilySSF554556.54E-29292IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-263859IPR002100Transcription factor, MADS-box
PfamPF014863.0E-1984169IPR002487Transcription factor, K-box
PROSITE profilePS5129713.93487179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRRRVSISR IENRTTRQVT FAKRRVGLFK KTHELSVLCD AQIGIVVFSS SGKLYEYCSD  60
TSGMEHIIRR YKIATGTDQI PESNDQLGQM HGELKRMQRE TLSLELSLQR YTGEDLNSVQ  120
FGDLHELEEK LENSVNKVRE RMFELLQQQI DNLRRKGKML HDENEHMCHL IQLRENQVAL  180
EHQAALDQHQ QMAMVAKTED RRRILESFPF SGEDQPSYGL PQVPPIFNPY RLQPTQPNLQ  240
DFSLQLPDYG TSMSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18171169MEF2C
5f28_B4e-18171169MEF2C
5f28_C4e-18171169MEF2C
5f28_D4e-18171169MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158LRRKGKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919877.11e-167MADS-box protein FBP24 isoform X1
RefseqXP_023919884.11e-167MADS-box protein FBP24 isoform X1
TrEMBLA0A2N9EQ811e-113A0A2N9EQ81_FAGSY; Uncharacterized protein
STRINGXP_008225840.16e-90(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-54MIKC_MADS family protein