PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold08239-snap-gene-0.14-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | E2F/DP | ||||||||
Protein Properties | Length: 465aa MW: 51511.3 Da PI: 4.4967 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 86.1 | 2.7e-27 | 147 | 212 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneir 68 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+ maker-scaffold08239-snap-gene-0.14-mRNA-1 147 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQ 209 6899******************************...99..*************************** PP E2F_TDP 69 wkg 71 wkg maker-scaffold08239-snap-gene-0.14-mRNA-1 210 WKG 212 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.2E-29 | 145 | 214 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.3E-34 | 147 | 212 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.36E-17 | 147 | 210 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 2.0E-24 | 149 | 212 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF144074 | 1.52E-33 | 224 | 329 | No hit | No description |
CDD | cd14660 | 6.81E-48 | 226 | 329 | No hit | No description |
Pfam | PF16421 | 1.0E-33 | 228 | 327 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0051446 | Biological Process | positive regulation of meiotic cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MSGLQAPNRS PQSQTGQIMQ QPLRRQLPFS SLKPPFAAPA DYHRFSDPRR GGAADHDAEA 60 EAIVVKPLQL KRKSETADYE ADSSDRTTVP GFTEVINSSL QTPVSVKGGK ANKTSRLTKC 120 NKSGPQTPVS NVGSPSGNNL TPAGPCRYDS SLGLLTKKFI NLIKHAEDGI LDLNKAAETL 180 EVQKRRIYDI TNVLEGIGLI EKKLKNRIQW KGLDVSRPGE VDENYSSLQA DVESLSIQEH 240 KLDDQIREMQ EQLRDLSENE NNQKWLFVTE EDIKGLPCFQ NETLIAIKAP HGTTLEVPDP 300 DEAVDYPQRR YRVVLRSTMG PIDVYLVSQF EEKFEEIEAP SDFLPSSGLN ENPSTTVVTE 360 ESRGKEIEMQ GQDAERLCSD LNASQDFVSG IMKIVPSDVD SDADYWLLSD ADVSITDMWR 420 TEPGVEWNDL GTLHEDYAMA NISIPQPQTP PSNATEGPPA NSTRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 3e-26 | 142 | 213 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:18424613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023914630.1 | 0.0 | transcription factor E2FB | ||||
Swissprot | Q9FV71 | 1e-163 | E2FB_ARATH; Transcription factor E2FB | ||||
TrEMBL | A0A2N9IRS8 | 0.0 | A0A2N9IRS8_FAGSY; Uncharacterized protein | ||||
STRING | VIT_06s0080g01110.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1947 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.2 | 1e-161 | E2F transcription factor 1 |
Publications ? help Back to Top | |||
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