PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold08156-augustus-gene-0.10-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NF-YC | ||||||||
Protein Properties | Length: 326aa MW: 35849.7 Da PI: 6.8621 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.3 | 7.1e-56 | 53 | 157 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlr 61 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+r maker-scaffold08156-augustus-gene-0.10-mRNA-1 53 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIR 116 89*****998899*************************************************** PP NF-YC 62 swlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 swlhaeenkrrtl+k+diaaa+trtdifdflvdivprde+k maker-scaffold08156-augustus-gene-0.10-mRNA-1 117 SWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 157 **************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.59E-34 | 28 | 147 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.8E-20 | 75 | 138 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.3E-36 | 76 | 153 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MENNNNNNSN NNTQIAHSSS YPLQPTPPPP PPPPPSSAAA TPFHHLLQQQ QQQLQMFWSY 60 QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI LELTIRSWLH 120 AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AGLVGGIVGA AAAASGVPYY 180 YPPMGQPAGG PHHGGMMIGR PAAVDPTGGV YVQPPSNAWQ SVWQGHAADD VSYGSGASSG 240 HGNLDGQRWS RIKMDYCKSS SLGNEPPLSN SFEADLLHGA MERGRAKLIG LGILIAYELI 300 LRFRIPVLRI GMNVVVSYYI PTFYIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-54 | 61 | 153 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 131 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023894467.1 | 1e-122 | nuclear transcription factor Y subunit C-1 | ||||
Swissprot | Q9SMP0 | 1e-103 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A2N9IET4 | 1e-116 | A0A2N9IET4_FAGSY; Uncharacterized protein | ||||
STRING | XP_010550738.1 | 1e-114 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11071 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 1e-96 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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