PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07957-augustus-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family AP2
Protein Properties Length: 429aa    MW: 48702 Da    PI: 7.0714
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07957-augustus-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.94.4e-074889238
                                            AP2  2 gykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgt 38
                                                    ++GV++++++gr++A+++d  ++n    k+ +++ ++   +
  maker-scaffold07957-augustus-gene-0.12-mRNA-1 48 IFRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVTIEGRKY 89
                                                   69******************9999666443347777666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.17E-1047134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.2E-1248133IPR001471AP2/ERF domain
PROSITE profilePS5103216.1648132IPR001471AP2/ERF domain
PfamPF008471.3E-44892IPR001471AP2/ERF domain
SMARTSM003803.0E-1748138IPR001471AP2/ERF domain
PROSITE profilePS5103210.613168279IPR001471AP2/ERF domain
SMARTSM003803.8E-8203285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-6254280IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-5254281IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MAKRSVKNTA NANNNSNNNT NTNNPATTKA KRTRKSIPRD SPPQRSSIFR GVTRHRWTGR  60
YEAHLWDKNC WNESQNKKGR QVTIEGRKYL EEKKLLKELD LLGAYDDEEA AAHAYDLAAL  120
KYWGHDTILN FQLSTYEEEL KEMDSQSKEE YIGSLRRKSS GFSRGVSKYR GVASVAMDFI  180
NEILDSIFIA QLITKFLYFH TYRHHHNGRW EARIGRVFGN KYLYLGTYGN FIPIFYYQIT  240
LASFSFNIIL DAATQEEAAT AYDMAAIEYR GLSAVTNFNL SRYIKWLRPN NNQNNPNNHE  300
PNSNDDLNPI ITPNTNNELG QSFISQQASS SASNTPQAPP PIRPSGASAS SALGLLLQSS  360
KFKEMMERTS VIDNPSTPQE SDPPRRTFPD DIQTYFDCQD SGSYAEGDDI IFGDTNSFAT  420
PIFHCELEP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296491e-33KP229649.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF26) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051280.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028051281.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-112AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2N9IV461e-178A0A2N9IV46_FAGSY; Uncharacterized protein
STRINGEOY261531e-167(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-95ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]