PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07893-snap-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bZIP
Protein Properties Length: 411aa    MW: 44726.7 Da    PI: 8.5704
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07893-snap-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_166.64.4e-21260322163
                                                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                                e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv+++ aeN+a k+e++ l+++++kl+ e+
  maker-scaffold07893-snap-gene-0.10-mRNA-1 260 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESMVAENEAIKSEINGLTDNSEKLRLEN 322
                                                89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.7E-351100IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.1E-18130222No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-14254319No hitNo description
SMARTSM003381.6E-19260324IPR004827Basic-leucine zipper domain
PfamPF001703.2E-20260322IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.61262325IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.13E-10263318No hitNo description
CDDcd147023.18E-18265312No hitNo description
PROSITE patternPS000360267282IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MANNEEKKPS KSEKSPSAAQ LDQTNQASQT NIQAYPDWAA MQAYYGPQVT IPPYYNSTMA  60
SGHPPHPYMW GPTQPMMPPY GAPYAAIYPH GGVYAHPGVP LNNFGFNYGA MKQAVTPLSI  120
ETPTKLGNTD QGFMKKLKEF DGLAMSIGNG SAESTEGGAE HRMSQSAETE DSNDGSDGNT  180
AKGNQSRRKR SREGTPTTVI GGKTETHAST VSAKEVNATT SKVLGAFELR NTHSVNTMTT  240
PTSVPQSCTV LPSEGWTQNE RELKRERRKQ SNRESARRSR LRKQAETEEL ARKVESMVAE  300
NEAIKSEING LTDNSEKLRL ENATLMEKLK NAQRGLQQRE EIILNSIDDK RTLPVSTENL  360
LSRVNNLGSG SIGKSIEEKS GMYDKNSSSG AKLHQLLDAS PRADAVAAGC S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276282RRSRLRK
2276283RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023912016.10.0G-box-binding factor 3-like isoform X1
RefseqXP_023912017.10.0G-box-binding factor 3-like isoform X1
SwissprotQ990891e-126CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A2I4F8E00.0A0A2I4F8E0_JUGRE; common plant regulatory factor 1-like isoform X2
TrEMBLA0A2N9F4930.0A0A2N9F493_FAGSY; Uncharacterized protein
STRINGAES827471e-179(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-110G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]