PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07866-snap-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CO-like
Protein Properties Length: 474aa    MW: 53709.6 Da    PI: 6.3895
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07866-snap-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.3e-081757438
                                   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                                                 C+ +++k + l+C+ ++  lC  C ++ H+       H 
  maker-scaffold07866-snap-gene-0.14-mRNA-1 17 FPCDFCNSKAAVLYCRADSAKLCLFCDQQVHSAnalslkHV 57
                                               57*****************************6566666665 PP
2zf-B_box19.42.2e-066092436
                                   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                                                +C+ +  k+++ +C  ++ +lC+ C l +H++
  maker-scaffold07866-snap-gene-0.14-mRNA-1 60 SICDSCRIKPVSVWCSMDNLMLCQHCDLDSHNN 92
                                               69*****************************87 PP
3CCT416.7e-154384671645
                                        CCT  16 kFeKkirYesRKavAesRpRvKGrFvkqae 45 
                                                +++K irYesRKa+A +R+RvKGrFvk++e
  maker-scaffold07866-snap-gene-0.14-mRNA-1 438 LYDKYIRYESRKARANTRKRVKGRFVKASE 467
                                                69*************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.6E-111461IPR000315B-box-type zinc finger
PROSITE profilePS501199.5991461IPR000315B-box-type zinc finger
CDDcd000211.52E-71761No hitNo description
PfamPF006434.8E-61860IPR000315B-box-type zinc finger
PROSITE profilePS501199.79857104IPR000315B-box-type zinc finger
SMARTSM003363.16298IPR000315B-box-type zinc finger
PfamPF062031.3E-13412465IPR010402CCT domain
PROSITE profilePS510179.355423465IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSKRAKSYNS DITEMMFPCD FCNSKAAVLY CRADSAKLCL FCDQQVHSAN ALSLKHVRSS  60
ICDSCRIKPV SVWCSMDNLM LCQHCDLDSH NNCSVSSLQN RVPVEGFSGH HTAIELASLF  120
GIDLEAYNFV NTNSGSCLHE QKLVNSHEFM VPSDDSCVWK GQGLRCGKCK DEVYEQLGEM  180
GNKDRMRVDE DGEELSPKTP PSEFAHSQQA NLESFELKIY DDELLRQQKS LASLLMVPSN  240
VEAKESDYLV AEGGLLWGCN PTYDYDYEAS QAWDFQLRES RQCEKHDPQA AKYGENNPEF  300
MIKNYVNIIQ ESSLTKPKVS QDLYEMNCST ICEDFLSDNN HSNPPLSNNK TSKGESINES  360
KVELSPKFML TEPKTCSSTG HVPAKQQPLL ASSDNVNGVI KNFDMELLAQ NRGQAMLRYK  420
EKKKTRRHGS YILLVVSLYD KYIRYESRKA RANTRKRVKG RFVKASETLD HVEM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022751839.11e-139zinc finger protein CONSTANS-LIKE 14-like
TrEMBLA0A1R3ISD31e-133A0A1R3ISD3_COCAP; Zinc finger, B-box
TrEMBLA0A3N7ED731e-133A0A3N7ED73_POPTR; Uncharacterized protein
STRINGEOY029001e-131(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.21e-72B-box type zinc finger protein with CCT domain