PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold07841-snap-gene-0.7-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 27179.2 Da PI: 6.5172 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.5 | 3.6e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd +l +++++G +W+ ++ g+ R++k+c++rw++yl maker-scaffold07841-snap-gene-0.7-mRNA-1 14 KGAWSVEEDNKLRSYIQRFGHWNWRELPKFAGLSRCGKSCRLRWLNYL 61 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE++ +++++++lG++ W+ Ia+ ++ gR+++++k++w+ + maker-scaffold07841-snap-gene-0.7-mRNA-1 67 RGNYTEEEELMIIKLHEELGNK-WSMIAASLP-GRSDNDIKNHWHAH 111 899*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.941 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.94E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.505 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.57E-11 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-25 | 69 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MVRAPIYDKN GLKKGAWSVE EDNKLRSYIQ RFGHWNWREL PKFAGLSRCG KSCRLRWLNY 60 LQPDLKRGNY TEEEELMIIK LHEELGNKWS MIAASLPGRS DNDIKNHWHA HLKKNTKKNP 120 TTSKMKTLSN EAYQHDADIA NKTEADSFVS NSPSYQVQEN SQLPLETFSS KFSYLSFDNA 180 PLSSINWTNN YPESLADGGF SASQSCYNEG IDSIYEAMQE FENFQRINED PYLVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023881680.1 | 1e-157 | transcription factor MYB13-like | ||||
Swissprot | Q6K1S6 | 1e-52 | MYB30_ORYSJ; Transcription factor MYB30 | ||||
TrEMBL | A0A2N9J0V5 | 1e-111 | A0A2N9J0V5_FAGSY; Uncharacterized protein | ||||
STRING | EOX99263 | 9e-73 | (Theobroma cacao) | ||||
STRING | cassava4.1_023710m | 1e-73 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 3e-53 | myb domain protein 63 |
Publications ? help Back to Top | |||
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