PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold07828-augustus-gene-0.15-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

CO-like

Protein Properties

Length: 329aa MW: 36550 Da PI: 6.5037

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold07828-augustus-gene-0.15-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.7	1.2e-08	4	36	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +++ ++lfC+ ++ +lC C +++H maker-scaffold07828-augustus-gene-0.15-mRNA-1 4 KLCDSCKSATATLFCRADSAFLCVGCDSKIHAA 36 68*****************************54 PP
2	zf-B_box	28	4.5e-09	46	91	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ maker-scaffold07828-augustus-gene-0.15-mRNA-1 46 VWVCEVCEQAPAHVTCKADAAVLCVTCDRDIHSAnplarrHERVPV 91 689****************************6689999999986 PP
3	CCT	70.5	4.3e-24	268	311	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ maker-scaffold07828-augustus-gene-0.15-mRNA-1 268 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 311 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.552	1	48	IPR000315	B-box-type zinc finger
SMART	SM00336	7.4E-14	1	48	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.5E-6	4	43	IPR000315	B-box-type zinc finger
CDD	cd00021	8.07E-9	5	48	No hit	No description
PROSITE profile	PS50119	10.879	44	91	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.0E-7	46	91	IPR000315	B-box-type zinc finger
CDD	cd00021	3.35E-9	47	91	No hit	No description
SMART	SM00336	2.5E-10	49	91	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.787	268	310	IPR010402	CCT domain
Pfam	PF06203	4.8E-18	268	310	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MASKLCDSCK SATATLFCRA DSAFLCVGCD SKIHAANKLA SRHARVWVCE VCEQAPAHVT 60 CKADAAVLCV TCDRDIHSAN PLARRHERVP VTPFYESVTV KTGAVNFLED RYFSDVEGEA 120 DVSREEAEAA SWLLPNPNNK VMESTDLNTG QFLLPEMDRY LNLEYGPVDP KLEAQEQNSS 180 GTDGVVPVQS KNVQPPLLND HCFDMDFSAS KPYSYGYNTQ CLSQSVSSSS LDVGVVPDGS 240 TVTEISDSYN KPITDSANRA VQISAADREA RVLRYREKRK NRKFEKTIRY ASRKAYAETR 300 PRIKGRFAKR TDVEVDVERI YGYGVVPSF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LK022687	7e-91	LK022687.1 Fagus sylvatica partial consC1 gene for constans like, exons 1-2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023874390.1	0.0	zinc finger protein CONSTANS-LIKE 4
Swissprot	Q940T9	1e-146	COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBL	A0A2N9ERJ2	0.0	A0A2N9ERJ2_FAGSY; Uncharacterized protein
STRING	cassava4.1_011192m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1302	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-142	CONSTANS-like 4